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Protein
Submitted name:

Uncharacterized protein

Gene

SNRNP40

Organism
Felis catus (Cat) (Felis silvestris catus)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:SNRNP40Imported
OrganismiFelis catus (Cat) (Felis silvestris catus)Imported
Taxonomic identifieri9685 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraFeliformiaFelidaeFelinaeFelis
Proteomesi
  • UP000011712 Componenti: Chromosome C1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSFCAG00000004195 Expressed in 3 organ(s), highest expression level in prefrontal cortex

Interactioni

Protein-protein interaction databases

STRINGi9685.ENSFCAP00000003864

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini63 – 358WD_REPEATS_REGIONInterPro annotationAdd BLAST296
Repeati63 – 96WDPROSITE-ProRule annotationAdd BLAST34
Repeati106 – 147WDPROSITE-ProRule annotationAdd BLAST42
Repeati148 – 190WDPROSITE-ProRule annotationAdd BLAST43
Repeati190 – 231WDPROSITE-ProRule annotationAdd BLAST42
Repeati232 – 266WDPROSITE-ProRule annotationAdd BLAST35
Repeati293 – 323WDPROSITE-ProRule annotationAdd BLAST31
Repeati324 – 358WDPROSITE-ProRule annotationAdd BLAST35

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0265 Eukaryota
ENOG410XSEW LUCA
GeneTreeiENSGT00810000125363
InParanoidiM3W1R3
KOiK12857
OMAiGDCENYG
OrthoDBiEOG091G0DR4

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR020472 G-protein_beta_WD-40_rep
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 7 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 7 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 5 hits
PS50082 WD_REPEATS_2, 7 hits
PS50294 WD_REPEATS_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

M3W1R3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIEQQKRKGP ELPLVPVKRQ RHELLLGAAG SGPGAGQQQT APGALLQAGP
60 70 80 90 100
PRCSSLQAPI MLLSGHEGEV YCCKFHPNGS TLASAGFDRL ILLWNVYGDC
110 120 130 140 150
DNYATLKGHS GAVMELHYNT DGSMLFSAST DKTVAVWDSE TGERVKRLKG
160 170 180 190 200
HTSFVNSCYP ARRGPQLVCT GSDDGTVKLW DIRKKAAIQT FQNTYQVLAV
210 220 230 240 250
TFNDTSDQII SGGIDNDIKV WDLRQNKLTY TMRGHADSVT GLSLSSEGSY
260 270 280 290 300
LLSNAMDNTV RVWDVRPFAP KERCVKIFQG NVHNFEKNLL RCSWSPDGSK
310 320 330 340 350
IAAGSADRFV YVWDTTSRRI LYKLPGHAGS INEVAFHPDE PIILSASSDK

RLYMGEIQ
Length:358
Mass (Da):39,382
Last modified:February 28, 2018 - v2
Checksum:i3540F6E78DE48214
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AANG04003369 Genomic DNA No translation available.
RefSeqiXP_011283059.1, XM_011284757.2

Genome annotation databases

EnsembliENSFCAT00000004196; ENSFCAP00000003864; ENSFCAG00000004195
GeneIDi101094774
KEGGifca:101094774

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AANG04003369 Genomic DNA No translation available.
RefSeqiXP_011283059.1, XM_011284757.2

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9685.ENSFCAP00000003864

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSFCAT00000004196; ENSFCAP00000003864; ENSFCAG00000004195
GeneIDi101094774
KEGGifca:101094774

Organism-specific databases

CTDi9410

Phylogenomic databases

eggNOGiKOG0265 Eukaryota
ENOG410XSEW LUCA
GeneTreeiENSGT00810000125363
InParanoidiM3W1R3
KOiK12857
OMAiGDCENYG
OrthoDBiEOG091G0DR4

Gene expression databases

BgeeiENSFCAG00000004195 Expressed in 3 organ(s), highest expression level in prefrontal cortex

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR020472 G-protein_beta_WD-40_rep
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 7 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 7 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 5 hits
PS50082 WD_REPEATS_2, 7 hits
PS50294 WD_REPEATS_REGION, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiM3W1R3_FELCA
AccessioniPrimary (citable) accession number: M3W1R3
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2013
Last sequence update: February 28, 2018
Last modified: October 10, 2018
This is version 42 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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