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Entry version 49 (07 Apr 2021)
Sequence version 1 (01 May 2013)
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Protein
Submitted name:

Similar to chloroplast inner membrane protein Tic110

Gene

CYME_CMQ342C

Organism
Cyanidioschyzon merolae (strain 10D) (Red alga)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Protein family/group databases

Transport Classification Database

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TCDBi
1.A.18.1.2, the chloroplast envelope anion channel-forming tic110 (tic110) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Similar to chloroplast inner membrane protein Tic110Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:CYME_CMQ342CImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCyanidioschyzon merolae (strain 10D) (Red alga)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri280699 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaRhodophytaBangiophyceaeCyanidialesCyanidiaceaeCyanidioschyzon
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007014 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 17

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei161 – 183HelicalSequence analysisAdd BLAST23

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
M1V6H9

Database of comparative protein structure models

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ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni230 – 272DisorderedSequence analysisAdd BLAST43

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili642 – 662Sequence analysisAdd BLAST21
Coiled coili686 – 706Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502S0W8, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_269006_0_0_1

Identification of Orthologs from Complete Genome Data

More...
OMAi
PTEYAQK

Database of Orthologous Groups

More...
OrthoDBi
1013184at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR031610, TIC110

The PANTHER Classification System

More...
PANTHERi
PTHR34935, PTHR34935, 4 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF16940, Tic110, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

M1V6H9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQSPAEALSQ QHAQGWHFTR GPFAVLGFVN LFPAGAGSNF ATRNLLRKGR
60 70 80 90 100
CSKQQLRGKR WCCVRGFRVE RQSLQAAAEV PTPYRFALGR APVERAKAAG
110 120 130 140 150
PISQQHARSE EELNELVAKR FLELVRSEGT GPVGVPAQLV KPAWLEWSDR
160 170 180 190 200
MATRLAGLGQ VWRVLFSVLL AATIGAAAAG VTPPGRRRAA GFAAGALPTA
210 220 230 240 250
ALAVVMLRRG RSIGAPRALA SALVESTVAV STKNMPSASD DQRRRADDNG
260 270 280 290 300
GEDTESDDNG ATSSNAPPRL GLASHIDPEM IQRVAIQYGM QPDAPSWKLE
310 320 330 340 350
TLVGLYERYL LALVQTSGTP RVSEVRQLKA LRSAFGLSHV DVGDAHHQVA
360 370 380 390 400
MRFRRENFVY IDDYIRAQDV DDRNYDEIFR ERAQDVNQKL SKLLFLSARV
410 420 430 440 450
LDDPTEPEEA YRYEMARLRN VFDLSESEFQ ARVRDIAVPF YQTAVRKAVW
460 470 480 490 500
LLEQGRSITL EKLRSAREML DVDDGTASRL HLEAYGALVQ RLLQAHSNEK
510 520 530 540 550
VPRLSAKDMS VLQEARRLLD IDAGDADALL RDAAEPLYQQ EVERVVESAD
560 570 580 590 600
LRIPTAHGRL AVRREELGLS VELARTAAEK WIRGRVTAIL KDATRALRVQ
610 620 630 640 650
NLTMTIEELN RLLGLIRRSL SIIHGVVWEE VVPNSAEQRT VNASLERIMS
660 670 680 690 700
VLLDELADLE RQQLYRVYLA KCLEDRMIDA QEGRNLDDLR AVLRISENEA
710 720 730 740 750
AQAYNRAAGP VYREAVLEVM ANRSEFTDAD IQSLNQIAGD LHIPAKVAHD
760 770 780 790 800
IRMELYRERL EASTRDNRVP SEEESSQLAR LRELLQLDSE ALAALHASVC
810 820 830 840 850
AGTYAQSVDE CMGSNGIIPE PYRAGLERLR QRLCLDERRA RELFLQVARR
860 870 880 890 900
RMAGYVQRAI KLLQKKQSFR GQDEERDVGD DPFVRRAGAF LGIEAGTITI
910 920 930 940 950
ELSNLIDFYI RNGILEMENE QAVYPVNLRG VFDLNILQEM YRQYLIQSFA
960 970 980 990 1000
AKSRTEKERL FNNLAHLGNI LGLTSAEVNA IHSNIGSVIY KTYASQALTN
1010 1020 1030 1040 1050
NRLEEKDIEF LRNIQNMLSM DEATCRTLLQ ETKEARAGFL FDKIFSRTFG
1060 1070 1080 1090 1100
MAEAVAEFRR VCRELDVDPV RDLKLTEDRR VRAFRAEIEH AIENGLITPE
1110 1120 1130 1140 1150
NQSLLKESQE ELGISAEKAR QVLLDCIQDR CEALIVQAAA SLRQRRQEGA
1160 1170 1180 1190 1200
ARDLSRALRF GKLLPFQVQT PTVTGAERQE LYLVYQAYAL GTARSNAEND
1210
QVKEDLALLR EMLGIQAA
Length:1,218
Mass (Da):136,750
Last modified:May 1, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5A03F92FCADD6379
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AP006499 Genomic DNA Translation: BAM82200.1

NCBI Reference Sequences

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RefSeqi
XP_005538236.1, XM_005538179.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
CMQ342CT; CMQ342CT; CMQ342C

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
16996302

Gramene; a comparative resource for plants

More...
Gramenei
CMQ342CT; CMQ342CT; CMQ342C

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
cme:CYME_CMQ342C

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006499 Genomic DNA Translation: BAM82200.1
RefSeqiXP_005538236.1, XM_005538179.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4BM5X-ray4.20A871-1218[»]
SMRiM1V6H9
ModBaseiSearch...
PDBe-KBiSearch...

Protein family/group databases

TCDBi1.A.18.1.2, the chloroplast envelope anion channel-forming tic110 (tic110) family

Genome annotation databases

EnsemblPlantsiCMQ342CT; CMQ342CT; CMQ342C
GeneIDi16996302
GrameneiCMQ342CT; CMQ342CT; CMQ342C
KEGGicme:CYME_CMQ342C

Phylogenomic databases

eggNOGiENOG502S0W8, Eukaryota
HOGENOMiCLU_269006_0_0_1
OMAiPTEYAQK
OrthoDBi1013184at2759

Family and domain databases

InterProiView protein in InterPro
IPR031610, TIC110
PANTHERiPTHR34935, PTHR34935, 4 hits
PfamiView protein in Pfam
PF16940, Tic110, 2 hits

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiM1V6H9_CYAM1
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: M1V6H9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2013
Last sequence update: May 1, 2013
Last modified: April 7, 2021
This is version 49 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Reference proteomeImported
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