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Protein
Submitted name:

U5 small nuclear ribonucleoprotein 40 kDa protein

Gene

M91_11072

Organism
Bos mutus (wild yak)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Keywordsi

Molecular functionRibonucleoproteinImported, Viral nucleoproteinImported

Names & Taxonomyi

Protein namesi
Submitted name:
U5 small nuclear ribonucleoprotein 40 kDa proteinImported
Gene namesi
ORF Names:M91_11072Imported
OrganismiBos mutus (wild yak)Imported
Taxonomic identifieri72004 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos

Subcellular locationi

    Keywords - Cellular componenti

    Virion

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini64 – 359WD_REPEATS_REGIONInterPro annotationAdd BLAST296
    Repeati64 – 97WDPROSITE-ProRule annotationAdd BLAST34
    Repeati107 – 148WDPROSITE-ProRule annotationAdd BLAST42
    Repeati149 – 191WDPROSITE-ProRule annotationAdd BLAST43
    Repeati191 – 232WDPROSITE-ProRule annotationAdd BLAST42
    Repeati233 – 267WDPROSITE-ProRule annotationAdd BLAST35
    Repeati294 – 324WDPROSITE-ProRule annotationAdd BLAST31
    Repeati325 – 359WDPROSITE-ProRule annotationAdd BLAST35

    Keywords - Domaini

    WD repeatPROSITE-ProRule annotation

    Phylogenomic databases

    KOiK12857

    Family and domain databases

    Gene3Di2.130.10.10, 1 hit
    InterProiView protein in InterPro
    IPR020472 G-protein_beta_WD-40_rep
    IPR015943 WD40/YVTN_repeat-like_dom_sf
    IPR001680 WD40_repeat
    IPR019775 WD40_repeat_CS
    IPR017986 WD40_repeat_dom
    IPR036322 WD40_repeat_dom_sf
    PfamiView protein in Pfam
    PF00400 WD40, 7 hits
    PRINTSiPR00320 GPROTEINBRPT
    SMARTiView protein in SMART
    SM00320 WD40, 7 hits
    SUPFAMiSSF50978 SSF50978, 1 hit
    PROSITEiView protein in PROSITE
    PS00678 WD_REPEATS_1, 5 hits
    PS50082 WD_REPEATS_2, 7 hits
    PS50294 WD_REPEATS_REGION, 1 hit

    Sequencei

    Sequence statusi: Complete.

    L8I0B4-1 [UniParc]FASTAAdd to basket
    « Hide
            10         20         30         40         50
    MIEQQKRKGP ELPLVPVKRQ RHELLLGAAG GSGPGAGQQQ AAPGALLQAG
    60 70 80 90 100
    PPRCSSLQAP IMLLSGHEGE VYCCKFHPNG STLASAGFDR LILLWNVYGD
    110 120 130 140 150
    CDNYATLKGH SGAVMELHYN TDGSMLFSAS TDKTVAVWDS ETGERVKRLK
    160 170 180 190 200
    GHTSFVNSCY PARRGPQLVC TGSDDGTVKL WDIRKKAAIQ TFQNTYQVLA
    210 220 230 240 250
    VTFNDTSDQI ISGGIDNDIK VWDLRQNKLT YTMRGHADSV TGLSLSSEGS
    260 270 280 290 300
    YLLSNAMDNT VRVWDVRPFA PKERCVKIFQ GNVHNFEKNL LRCSWSPDGS
    310 320 330 340 350
    KIAAGSADRF VYVWDTTSRR ILYKLPGHAG SINEVAFHPD EPIILSASSD

    KRLYMGEIQ
    Length:359
    Mass (Da):39,409
    Last modified:April 3, 2013 - v1
    Checksum:i27528F185A5D3ABF
    GO

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    JH882610 Genomic DNA Translation: ELR48717.1
    RefSeqiXP_005906239.1, XM_005906177.2

    Genome annotation databases

    GeneIDi102281849
    KEGGibom:102281849

    Similar proteinsi

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    JH882610 Genomic DNA Translation: ELR48717.1
    RefSeqiXP_005906239.1, XM_005906177.2

    3D structure databases

    ModBaseiSearch...
    MobiDBiSearch...

    Protocols and materials databases

    Structural Biology KnowledgebaseSearch...

    Genome annotation databases

    GeneIDi102281849
    KEGGibom:102281849

    Organism-specific databases

    CTDi9410

    Phylogenomic databases

    KOiK12857

    Family and domain databases

    Gene3Di2.130.10.10, 1 hit
    InterProiView protein in InterPro
    IPR020472 G-protein_beta_WD-40_rep
    IPR015943 WD40/YVTN_repeat-like_dom_sf
    IPR001680 WD40_repeat
    IPR019775 WD40_repeat_CS
    IPR017986 WD40_repeat_dom
    IPR036322 WD40_repeat_dom_sf
    PfamiView protein in Pfam
    PF00400 WD40, 7 hits
    PRINTSiPR00320 GPROTEINBRPT
    SMARTiView protein in SMART
    SM00320 WD40, 7 hits
    SUPFAMiSSF50978 SSF50978, 1 hit
    PROSITEiView protein in PROSITE
    PS00678 WD_REPEATS_1, 5 hits
    PS50082 WD_REPEATS_2, 7 hits
    PS50294 WD_REPEATS_REGION, 1 hit
    ProtoNetiSearch...

    Entry informationi

    Entry nameiL8I0B4_9CETA
    AccessioniPrimary (citable) accession number: L8I0B4
    Entry historyiIntegrated into UniProtKB/TrEMBL: April 3, 2013
    Last sequence update: April 3, 2013
    Last modified: May 23, 2018
    This is version 29 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)
    UniProt is an ELIXIR core data resource
    Main funding by: National Institutes of Health

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