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UniProtKB - L0RBN2 (L0RBN2_9DELT)

Entry version 28 (02 Dec 2020)
Sequence version 1 (06 Mar 2013)
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Protein

IcmF-related_N domain-containing protein

Gene

DESAM_21896

Organism
Desulfovibrio hydrothermalis AM13 = DSM 14728
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
IcmF-related_N domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:DESAM_21896Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDesulfovibrio hydrothermalis AM13 = DSM 14728Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1121451 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000010808 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei12 – 29HelicalSequence analysisAdd BLAST18
Transmembranei35 – 56HelicalSequence analysisAdd BLAST22
Transmembranei431 – 451HelicalSequence analysisAdd BLAST21

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		1121451.DESAM_21896

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini185 – 433IcmF-related_NInterPro annotationAdd BLAST249

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni871 – 893DisorderedSequence analysisAdd BLAST23

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi875 – 889PolarSequence analysisAdd BLAST15

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		COG3523, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_004067_0_0_7

Database of Orthologous Groups

More...OrthoDBi		393769at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR025743, IcmF-related_N_dom
IPR027417, P-loop_NTPase

Pfam protein domain database

More...Pfami		View protein in Pfam
PF14331, IcmF-related_N, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF52540, SSF52540, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

L0RBN2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKKLILQILK ALFYVLLFVA AAVASYALVT YKGWPWWAGA CLFGGVIGFV 
        60         70         80         90        100
VAILFMRKWF LRRRERKFVK RIVDQDDSAI AAAPVHERAR LQDLQTRWMD 
       110        120        130        140        150
AVELLRSSEL RKRGNPLYVL PWYMVFGESD SGKTTAVASS RLTTILTDVG 
       160        170        180        190        200
PVPGVSATKN CDWWFFEEAI ILDTAGRYAI PLDESRDKEE WERFLTLLVK 
       210        220        230        240        250
YRKKEPLNGL IVTVPADRLL GGDEDGLAEY GRSLRRRINE LMRVLGVRFP 
       260        270        280        290        300
VYVLITKMDL VFGLKGLTEV LPEYTHSQAM GLVNETMMAD PEEFVDKAIL 
       310        320        330        340        350
SVTERLRELR LLLLDSSSRF DPAFLLFSEE LDRLRPRIKA FAVGAFEDNP 
       360        370        380        390        400
YQELPLFRGM FFSSGEQTGE QSSEFISGLS SLKNVEKKLP KTARGLFLHD 
       410        420        430        440        450
FFSKILPRDR NLFTPILEFL KWKLLTRNMG MGVWLLILFF LSGLFSLSYI 
       460        470        480        490        500
ANQRAMNDLF VAFPEKPVFS EKVDEKIVQI DGFRKKILDL HNLNSDWWIP 
       510        520        530        540        550
RMGLEVSNEA EFEIKKLYCQ DVESLLLKPM DEQLDSAVNK LDVKSTEQLT 
       560        570        580        590        600
SSFIKLLVWR IDLIKNRLST GTRKPLSDFE LPSGRAMSTA IEGFNPDLMK 
       610        620        630        640        650
YFGELYGSYL EWNDNTEGLS EQKMLLQARL GKVFSLKGSD FKWLVDWIND 
       660        670        680        690        700
NPELEPVTLQ DFWGGPQLLL KNEIYVAPAY TQSGHKMLQG FLAELKDAMQ 
       710        720        730        740        750
DVGEFDKKEK AFWVWYAGEY YKIWFNFAEH FADGKKQLLT KNDYRDMAAK 
       760        770        780        790        800
MALPNNPYFR LLTQMKDEFS PIKKIITPPD WVNQVLYFNV VLAQYKASKA 
       810        820        830        840        850
KGVEESSEKA QDSLRKIVAE FGGKIAQDVE QRIEVAKRLD GYINVLDDVS 
       860        870        880        890        900
AFTDTQEKAF KSAAALFPGS GGSPGGSSGG GSSGASGSAA LKKNPVEGAT 
       910        920        930        940        950
QAMSALKAHM NSEGRGSDMF WHLVAGPLDF IVYVIISEAS CELQQLWEGQ 
       960        970        980        990       1000
VLAEVAHVPS NKLRENLFGK TGVVNKFITG TAKPFLSRDT KGWRSKVWMG 
      1010       1020       1030       1040       1050
IPFPFKDDFF TFLNDGARGS QEIQPEYKVT LSTLPTSVNT NATQEPYSTI 
      1060       1070       1080       1090       1100
LTVECGSAQQ VLSNFNYAEE MLFTWKPEDC GTTTLTIKFP GLSLTRSYDG 
      1110       1120       1130       1140       1150
KLGFAKFLGE FRGGVMTFTP KDFPQQEKAL IDLGVETVKV GYAFKGAAPV 
      1160       1170
IELLDIKPLN IPDNISNCWQ
Length:1,170
Mass (Da):132,302
Last modified:March 6, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4C19E82C5AEA9CCE
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
FO203522 Genomic DNA Translation: CCO24169.1

NCBI Reference Sequences

More...RefSeqi		WP_015336770.1, NZ_AUDB01000007.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		CCO24169; CCO24169; DESAM_21896

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		dhy:DESAM_21896

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|1121451.3.peg.2128

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO203522 Genomic DNA Translation: CCO24169.1
RefSeqiWP_015336770.1, NZ_AUDB01000007.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi1121451.DESAM_21896

Genome annotation databases

EnsemblBacteriaiCCO24169; CCO24169; DESAM_21896
KEGGidhy:DESAM_21896
PATRICifig|1121451.3.peg.2128

Phylogenomic databases

eggNOGiCOG3523, Bacteria
HOGENOMiCLU_004067_0_0_7
OrthoDBi393769at2

Family and domain databases

InterProiView protein in InterPro
IPR025743, IcmF-related_N_dom
IPR027417, P-loop_NTPase
PfamiView protein in Pfam
PF14331, IcmF-related_N, 1 hit
SUPFAMiSSF52540, SSF52540, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiL0RBN2_9DELT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: L0RBN2
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: December 2, 2020
This is version 28 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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