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Entry version 49 (02 Jun 2021)
Sequence version 1 (06 Mar 2013)
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Protein
Submitted name:

PAS domain S-box

Gene

Mic7113_1160

Organism
Microcoleus sp. PCC 7113
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
PAS domain S-boxImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:Mic7113_1160Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMicrocoleus sp. PCC 7113Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1173027 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeOscillatorialesMicrocoleaceaeMicrocoleusunclassified Microcoleus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000010471 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - PTMi

PhosphoproteinARBA annotation

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
1173027.Mic7113_1160

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini78 – 148PASInterPro annotationAdd BLAST71
Domaini151 – 203PACInterPro annotationAdd BLAST53
Domaini204 – 276PASInterPro annotationAdd BLAST73
Domaini279 – 331PACInterPro annotationAdd BLAST53
Domaini409 – 459PACInterPro annotationAdd BLAST51
Domaini499 – 545PASInterPro annotationAdd BLAST47
Domaini573 – 624PACInterPro annotationAdd BLAST52
Domaini700 – 752PACInterPro annotationAdd BLAST53
Domaini770 – 1004Histidine kinaseInterPro annotationAdd BLAST235

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili6 – 26Sequence analysisAdd BLAST21
Coiled coili44 – 64Sequence analysisAdd BLAST21
Coiled coili322 – 342Sequence analysisAdd BLAST21
Coiled coili447 – 481Sequence analysisAdd BLAST35
Coiled coili782 – 809Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG0642, Bacteria
COG2202, Bacteria
COG2205, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_297328_0_0_3

Database of Orthologous Groups

More...
OrthoDBi
1635706at2

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00082, HisKA, 1 hit
cd00130, PAS, 4 hits

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.565.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003594, HATPase_C
IPR036890, HATPase_C_sf
IPR005467, His_kinase_dom
IPR003661, HisK_dim/P
IPR036097, HisK_dim/P_sf
IPR001610, PAC
IPR000014, PAS
IPR000700, PAS-assoc_C
IPR035965, PAS-like_dom_sf
IPR013656, PAS_4
IPR013767, PAS_fold
IPR013655, PAS_fold_3
IPR004358, Sig_transdc_His_kin-like_C

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02518, HATPase_c, 1 hit
PF00512, HisKA, 1 hit
PF00989, PAS, 1 hit
PF08447, PAS_3, 3 hits
PF08448, PAS_4, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00344, BCTRLSENSOR

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00387, HATPase_c, 1 hit
SM00388, HisKA, 1 hit
SM00086, PAC, 5 hits
SM00091, PAS, 5 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF47384, SSF47384, 1 hit
SSF55785, SSF55785, 5 hits
SSF55874, SSF55874, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00229, sensory_box, 5 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50109, HIS_KIN, 1 hit
PS50113, PAC, 5 hits
PS50112, PAS, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

K9WB63-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTRLNLDDFA KQIQDWCQRL AQLQQLTGES PSTPQQQEII LTAVEGLSTA
60 70 80 90 100
FEELQVANEE LYQQHEKLLM TQQALIAERQ RYQQLFEFAP DAYLVTDVNG
110 120 130 140 150
VIQEANRAAA TRLNHSQQFL VGKPLACYVV KEERRAFRNQ LNQLRQVEGV
160 170 180 190 200
QEWEVSLRSP DQTPLITALR VGTIQSPEGQ PMGFRWLMRD ITEHKRIELE
210 220 230 240 250
LRQAHERLHL AANALDGIIY DWNVENGTVD RTQGLVEVLG YRPEEAQPTL
260 270 280 290 300
DWWTQFIHPD DRQPVRQVIS NALANSSAFD TEYRIRDKNY QYLHIWDRGQ
310 320 330 340 350
IIRNASGRAV RVVGSTLNIS GRKQAEEQAQ QSAAEIRQIF NMLPSLVWKF
360 370 380 390 400
CPTRFQFVYI SDMMAELSGI SREAFLENPQ IWDDRVDLGN ESQEALRISW
410 420 430 440 450
EAIRKGESYR VIYRFHTLHR GVRWFEVIGR AVDEEGVLYY YGSTTDITEC
460 470 480 490 500
KQAEESLHRL NQELENRVKE RTSELEQLNH QLLAEIAERM SVEAALHQRE
510 520 530 540 550
QEYRALVEHA PDIIERFDPQ GRHLYVNPAI ESVTGKPPNE FIGKTNRELG
560 570 580 590 600
ISEPNLAIWE QALSRVFQTG EEQQFEFSLV TAQGLKYYQT RLVPEMETDG
610 620 630 640 650
NLISVLGMTR DITDHKLAIE ALRESEDGFR QLTENINEVF WMVTPDFSER
660 670 680 690 700
LYISPAYEQI WGRSCQSLYD QSNSWSEAVH SEDREFLIGK QEQESRGEVT
710 720 730 740 750
DVEYRIVRPD GSMRWIRDRA FPIYDAQGQV YRIAGIAEDI TCRKQAELES
760 770 780 790 800
YKVLQREREL SMLKSSFVAM TSHEFRTPLT AISSSTDLLE RYRNRLSEEK
810 820 830 840 850
QQAHLHRIKS AVLRMTQMLN DILLMSEAEA GKLQFNPAPL NLVQFCRHLV
860 870 880 890 900
EDVQPTAKEQ QVIHFTYRSD GTIAGQDSDE IKQKRFDFLS GLALWDEKLL
910 920 930 940 950
RQILGNLLSN ALKYSPEGGT VQFDLTAKND RVIFQIQDQG IGIPPADQSR
960 970 980 990 1000
LFEAFHRANN VGTIQGTGLG LAIVKQCLDL HRGEITFTSE VGKGTRFIIT

LPLS
Length:1,004
Mass (Da):115,744
Last modified:March 6, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iAD0691B59902F9A5
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP003630 Genomic DNA Translation: AFZ17051.1

NCBI Reference Sequences

More...
RefSeqi
WP_015181211.1, NC_019738.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AFZ17051; AFZ17051; Mic7113_1160

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mic:Mic7113_1160

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|1173027.3.peg.1277

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003630 Genomic DNA Translation: AFZ17051.1
RefSeqiWP_015181211.1, NC_019738.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi1173027.Mic7113_1160

Genome annotation databases

EnsemblBacteriaiAFZ17051; AFZ17051; Mic7113_1160
KEGGimic:Mic7113_1160
PATRICifig|1173027.3.peg.1277

Phylogenomic databases

eggNOGiCOG0642, Bacteria
COG2202, Bacteria
COG2205, Bacteria
HOGENOMiCLU_297328_0_0_3
OrthoDBi1635706at2

Family and domain databases

CDDicd00082, HisKA, 1 hit
cd00130, PAS, 4 hits
Gene3Di3.30.565.10, 1 hit
InterProiView protein in InterPro
IPR003594, HATPase_C
IPR036890, HATPase_C_sf
IPR005467, His_kinase_dom
IPR003661, HisK_dim/P
IPR036097, HisK_dim/P_sf
IPR001610, PAC
IPR000014, PAS
IPR000700, PAS-assoc_C
IPR035965, PAS-like_dom_sf
IPR013656, PAS_4
IPR013767, PAS_fold
IPR013655, PAS_fold_3
IPR004358, Sig_transdc_His_kin-like_C
PfamiView protein in Pfam
PF02518, HATPase_c, 1 hit
PF00512, HisKA, 1 hit
PF00989, PAS, 1 hit
PF08447, PAS_3, 3 hits
PF08448, PAS_4, 1 hit
PRINTSiPR00344, BCTRLSENSOR
SMARTiView protein in SMART
SM00387, HATPase_c, 1 hit
SM00388, HisKA, 1 hit
SM00086, PAC, 5 hits
SM00091, PAS, 5 hits
SUPFAMiSSF47384, SSF47384, 1 hit
SSF55785, SSF55785, 5 hits
SSF55874, SSF55874, 1 hit
TIGRFAMsiTIGR00229, sensory_box, 5 hits
PROSITEiView protein in PROSITE
PS50109, HIS_KIN, 1 hit
PS50113, PAC, 5 hits
PS50112, PAS, 3 hits

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiK9WB63_9CYAN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: K9WB63
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: June 2, 2021
This is version 49 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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