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UniProtKB - K7ZRM7 (K7ZRM7_9CAUD)

Entry version 22 (07 Oct 2020)
Sequence version 1 (06 Feb 2013)
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Protein

LPD22 domain-containing protein

Gene
N/A
Organism
Xanthomonas citri phage CP2
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
LPD22 domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiXanthomonas citri phage CP2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1188795 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiViruses › Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes › Caudovirales › Podoviridae ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000009366 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini20 – 113LPD22InterPro annotationAdd BLAST94

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1543 – 1562DisorderedSequence analysisAdd BLAST20

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1543 – 1558PolyampholyteSequence analysisAdd BLAST16

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR040738, LPD22

Pfam protein domain database

More...Pfami		View protein in Pfam
PF18834, LPD22, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

K7ZRM7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGKYSEIIAA TQAEDAQARA RAAGITAPQV EPDAMGRAMR LADQRGLPPG 
        60         70         80         90        100
VVADNLPEYD QQQQLDALGD AASASPALAR WLGDPNHTAL SKDDTGVLAG 
       110        120        130        140        150
LGRQFNSGLL SAKETLPWLP LPQSALDLDK ERKAAAARGP QMMASPDPSW 
       160        170        180        190        200
FSELVGKFQS GWEQGKAGAG LLPMPDLGSA SSRAIEEQVA RGLGYQDAAN 
       210        220        230        240        250
YDATRTAVYV ADQQRRAQAA DVETAATAAG FQEIADAEKT KDTGKIARAV 
       260        270        280        290        300
VTNPRAVMAV VAQSLGNTAP QLALSAAMPA SRVVAGVTAG TGSFATEQGM 
       310        320        330        340        350
TILDVMGDAG VETSDPAAVS AFLRNKPAME KARQKALTRG VAVGTFDALT 
       360        370        380        390        400
AGFAGRLLAN SRRTAASIGS RVVGEGLVQA GGGAAGEATA QLASEGKITS 
       410        420        430        440        450
QSDILLEAAA EVPTFLAEGR GQIAEARRAA MHNADRFDAH QEQRAISDLV 
       460        470        480        490        500
NLASQSKTRE RSATRFESLI RDMTSEGEDT IYLSADGAQR LFQSANSEGG 
       510        520        530        540        550
PDLGALVDAD ALREAIATGG EVAIPLAKYA TLVTPELHAA VADQVRLQPG 
       560        570        580        590        600
GRHDLPAVSS EEIQQAIDQG LAEAQQQDAR ENGPAGQVYD DVVGQLLSRQ 
       610        620        630        640        650
DEQLARQNAS VVQSVYRNLA ERVGTDAWTL YQQFKIRIPG ATTDTRARPR 
       660        670        680        690        700
GVDIDVDPFL DALRSGKMPT DREIYGDTLV SALHAAGGLS DSGGELANMD 
       710        720        730        740        750
AAKARPGLVN NLAGMSLDDA LVWAYQEGFI TQAPTNQQEG SYDADAPDIN 
       760        770        780        790        800
TLLDLLAQDL GGNPVYRPAA MNAERATFRD RAQSLQDELD QRGIDLQQAD 
       810        820        830        840        850
NATARQALGY ANRMLEQGQP VEPDAVDYAV RDLVAGPSGR PESAATRALV 
       860        870        880        890        900
DQAVADGDLA KMLQGIAAQE GIDADQAALA LRLAEITPDL NVTMVAAPAN 
       910        920        930        940        950
ANAAGIYNNT TNEIWIHQAV PSVVLHEVLH GVTSAMMTSP TLRRSNATVA 
       960        970        980        990       1000
RAVAEFNDLL GAAQAHFAGM ETDGADVPAA LRATLQDPRG PLSNIKELLT 
      1010       1020       1030       1040       1050
YGMTDKRFQE WLATVPAPAG REESRTAWQW FKDAIATMLG VTGQERTALD 
      1060       1070       1080       1090       1100
ALIESTSDLV DFAQANPRAA NFAQMSEANR LGAPITDAAA AQGGPAEAFR 
      1110       1120       1130       1140       1150
GVTREQFLGE PRITSNTNAA DLRPRALREL DAVDSVPFGD GDLTAKYSDG 
      1160       1170       1180       1190       1200
SAAVFDGDKV VASYNFGDTL VVDRAYRRRG IGEELVYQWR TRNPQASVAR 
      1210       1220       1230       1240       1250
ERTKASQALQ EKVWDRIQSE LAADPRTLNQ GGEKPRGAVT FEGVPGARVF 
      1260       1270       1280       1290       1300
NIELLKGMDA STFMHEMGHV YLEVLNDLAA RDGAPAQITN DMATLNAWLG 
      1310       1320       1330       1340       1350
REAGTAFTVD QHEQFARGFE AYLREGRAPS SALRRTFAAF KVWLTALYRS 
      1360       1370       1380       1390       1400
VRSLNVELTD DVRNVMDRIV ASDAEIEDAR AGQYQGALIA DGMAVGMTFE 
      1410       1420       1430       1440       1450
QLQAYNEAVN AARADAEATV AAEVLLAERR EQQAWYNREK REVRTQVLEE 
      1460       1470       1480       1490       1500
VRNLPVYRAQ RLLRNGKLPN GDLAPDELRV KLSKDELLDK FGQSFLRNLV 
      1510       1520       1530       1540       1550
GMYSVEGGVR ADDAAAIYGF GSGRELIESL VNAPRLADAV ASETDARMKD 
      1560       1570       1580       1590       1600
RHPDPMTDGT LPDRAMIAAH RDRQADVMVR EIRALEQHVN GRQVSQAAVI 
      1610       1620       1630       1640       1650
KGVARQIIQD KKLRHLQPAT YRSAEAKAGR EAFEAAAKQD WGSALAARRR 
      1660       1670       1680       1690       1700
QLLNFELFRE AVRARDEAAR TAKYLAKFSE TKTRARLGKA GADYLDQVDG 
      1710       1720       1730       1740       1750
LLDRFDFRKI SDKAADRRSS LATWIEVQAQ KGIDVNLPPK IMDEAFTIPY 
      1760       1770       1780       1790       1800
REMTVADLAT LRDAIRSIDH LARLKGKLLL AGEVRDAAEV DAAMAASLAA 
      1810       1820       1830       1840       1850
AHAARPVTTG DRGPKDKLRQ AFMQGRVIQA TATDMARELD GFKDQGAIWM 
      1860       1870       1880       1890       1900
NTVGVMRDAV NNRLNPALQQ AQDDLAKVYV KHYTKAEIRG FSERVPMPEV 
      1910       1920       1930       1940       1950
NGDLWSKSRL LGLALNWGNA GNREAILTQA RGRMSSEQVN ALLSKLDSRD 
      1960       1970       1980       1990       2000
WAFVEDVWRL IDAQWPAIAE AQKRRTGLVP ERVQASAFTV QTSDGKTLQI 
      2010       2020       2030       2040       2050
PGGYYPLKYE SDSVKTMKDE ADDFYNSIRT GRTAKAATRN GHTIERVGSG 
      2060       2070       2080       2090       2100
GRTVRLDTGV VQQHLRDVLR DVHLGDAVNY VHNVLNGQEF KEAVDSTGMQ 
      2110       2120       2130       2140       2150
EYRQALEVWL KDAAAGEIGP RVWHERAMRA ARQNFTASVL TFKVTSALLQ 
      2160       2170       2180       2190       2200
LSGVVPTIVT IGQGHTMAGI GQYLGKPRAM TRYVREASPY MDSRLRTHIE 
      2210       2220       2230       2240       2250
AVQTVMDAEA GRFAAGKAAS IRFGYWMIGR VQGLVDTVTW LAAEQAGMAK 
      2260       2270       2280       2290       2300
FGNDVARARA YADDVVTRAQ GSGEFIDKSP LQRGTLGDNV RQTEWIKATT 
      2310       2320       2330       2340       2350
ALQGYMIAKG NLAYEQTRKA NLRNPRQAMK WAADMVMLFS VEGLLTAALT 
      2360       2370       2380       2390       2400
AKLPKDDDDD GLWDDLGEWA IKDALSTFFG VIPGGGVLVD QFRGYDSSGV 
      2410       2420       2430       2440       2450
VAGAWRAYAE LLEKVTPGED GEVNLDKGVA KAAVSAAGVT LGLPSTQVNK 
      2460       2470 
TIDAIAARAD GRDVSPYEYL TGPKKESK
Length:2,478
Mass (Da):267,483
Last modified:February 6, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iCE8B5BEE0B230C4A
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AB720064 Genomic DNA Translation: BAM66447.1

NCBI Reference Sequences

More...RefSeqi		YP_007392914.1, NC_020205.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...GeneIDi		14515755

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		vg:14515755

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB720064 Genomic DNA Translation: BAM66447.1
RefSeqiYP_007392914.1, NC_020205.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

GeneIDi14515755
KEGGivg:14515755

Family and domain databases

InterProiView protein in InterPro
IPR040738, LPD22
PfamiView protein in Pfam
PF18834, LPD22, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiK7ZRM7_9CAUD
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: K7ZRM7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 6, 2013
Last sequence update: February 6, 2013
Last modified: October 7, 2020
This is version 22 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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