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Protein
Submitted name:

Uncharacterized protein

Gene
N/A
Organism
Caenorhabditis japonica
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
OrganismiCaenorhabditis japonicaImported
Taxonomic identifieri281687 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000005237 Componenti: Unassembled WGS sequence

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei114 – 137HelicalSequence analysisAdd BLAST24
Transmembranei173 – 196HelicalSequence analysisAdd BLAST24
Transmembranei443 – 460HelicalSequence analysisAdd BLAST18

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi281687.CJA04023b

Structurei

3D structure databases

ProteinModelPortaliK7GWT5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 110Neur_chan_LBDInterPro annotationAdd BLAST106
Domaini118 – 459Neur_chan_membInterPro annotationAdd BLAST342

Sequence similaritiesi

Belongs to the ligand-gated ion channel (TC 1.A.9) family. [View classification]SAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG3645 Eukaryota
ENOG410XQGR LUCA
InParanoidiK7GWT5
OrthoDBiEOG091G0R20

Family and domain databases

Gene3Di2.70.170.10, 1 hit
InterProiView protein in InterPro
IPR006202 Neur_chan_lig-bd
IPR036734 Neur_chan_lig-bd_sf
IPR006201 Neur_channel
IPR036719 Neuro-gated_channel_TM_sf
IPR006029 Neurotrans-gated_channel_TM
IPR018000 Neurotransmitter_ion_chnl_CS
PANTHERiPTHR18945 PTHR18945, 1 hit
PfamiView protein in Pfam
PF02931 Neur_chan_LBD, 1 hit
PF02932 Neur_chan_memb, 1 hit
SUPFAMiSSF63712 SSF63712, 1 hit
SSF90112 SSF90112, 2 hits
PROSITEiView protein in PROSITE
PS00236 NEUROTR_ION_CHANNEL, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.iShow all

K7GWT5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKSVMSTDVI VDYLGNIHWP LSAIFTSSCP LDVKHYPFDR QTCILKYASW
60 70 80 90 100
AYDGTKIDLL LKSEQGDITN YITNTEWSLI GIRAEKNQVI YSCCPEPYPF
110 120 130 140 150
IDVHVTIERR AMFYVFNLIL PCVLISLIAL MGFYMPTDSG EKVTLGITSL
160 170 180 190 200
LSTTVFLMLV AEGMPPTSEA LPLIGIYYGV TIMLVALATA MTVFTVNIHH
210 220 230 240 250
NGVHGYPVPP FLQVFAFRYL SKLLFVRIEP YHSIAHHVRH MYQKEHPNEC
260 270 280 290 300
KLTAGLHYHR LADFDAKRQE QLKQQQMQRQ YDLQRDTSNL SVISSNVHCN
310 320 330 340 350
QDDRLLRQNS RYNTQDKAFR NSLSAKTGSP PVKKKVSFSS LNSHETPVDS
360 370 380 390 400
PIYGRKLRRN SLTNGGHNCH VDGEKVPKVS LETDNASCSN EPLVVDEFER
410 420 430 440 450
EFLRVMSMVH GIIERNEMRV AERDKRDAIA LEWQQVAMVL DRFLLVVFLI
460
GTSMSTFVIL NQRNLFE
Length:467
Mass (Da):53,364
Last modified:January 9, 2013 - v1
Checksum:i6CDC70C72C634705
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
K7GWT4K7GWT4_CAEJA
Uncharacterized protein
463Annotation score:

Genome annotation databases

EnsemblMetazoaiCJA04023b; CJA04023b; WBGene00123227

Similar proteinsi

Entry informationi

Entry nameiK7GWT5_CAEJA
AccessioniPrimary (citable) accession number: K7GWT5
Entry historyiIntegrated into UniProtKB/TrEMBL: January 9, 2013
Last sequence update: January 9, 2013
Last modified: February 28, 2018
This is version 29 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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