Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 52 (12 Aug 2020)
Sequence version 1 (09 Jan 2013)
Previous versions | rss
Help videoAdd a publicationFeedback
Protein

ARID domain-containing protein

Gene

ARID1A

Organism
Pelodiscus sinensis (Chinese softshell turtle) (Trionyx sinensis)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
ARID domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ARID1AImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPelodiscus sinensis (Chinese softshell turtle) (Trionyx sinensis)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri13735 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaTestudinesCryptodiraTrionychiaTrionychidaePelodiscus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007267 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

NucleusARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Keywords - PTMi

PhosphoproteinARBA annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini637 – 728ARIDInterPro annotationAdd BLAST92

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 454DisorderedSequence analysisAdd BLAST454
Regioni598 – 625DisorderedSequence analysisAdd BLAST28
Regioni733 – 1235DisorderedSequence analysisAdd BLAST503
Regioni1357 – 1401DisorderedSequence analysisAdd BLAST45
Regioni1486 – 1509DisorderedSequence analysisAdd BLAST24
Regioni1522 – 1556DisorderedSequence analysisAdd BLAST35

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi13 – 32PolarSequence analysisAdd BLAST20
Compositional biasi48 – 127PolarSequence analysisAdd BLAST80
Compositional biasi134 – 148PolarSequence analysisAdd BLAST15
Compositional biasi149 – 163Pro-richSequence analysisAdd BLAST15
Compositional biasi164 – 260PolarSequence analysisAdd BLAST97
Compositional biasi276 – 304PolarSequence analysisAdd BLAST29
Compositional biasi320 – 335PolarSequence analysisAdd BLAST16
Compositional biasi347 – 418PolarSequence analysisAdd BLAST72
Compositional biasi747 – 777PolarSequence analysisAdd BLAST31
Compositional biasi816 – 842PolarSequence analysisAdd BLAST27
Compositional biasi920 – 990PolarSequence analysisAdd BLAST71
Compositional biasi1010 – 1053PolarSequence analysisAdd BLAST44
Compositional biasi1077 – 1093PolarSequence analysisAdd BLAST17
Compositional biasi1101 – 1132PolarSequence analysisAdd BLAST32
Compositional biasi1162 – 1186Pro-richSequence analysisAdd BLAST25
Compositional biasi1542 – 1556PolarSequence analysisAdd BLAST15

Phylogenomic databases

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000155194

KEGG Orthology (KO)

More...
KOi
K11653

Database of Orthologous Groups

More...
OrthoDBi
256110at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.150.60, 1 hit
1.25.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001606, ARID_dom
IPR036431, ARID_dom_sf
IPR011989, ARM-like
IPR016024, ARM-type_fold
IPR021906, BAF250/Osa
IPR033388, BAF250_C
IPR030094, BAF250a

The PANTHER Classification System

More...
PANTHERi
PTHR12656, PTHR12656, 1 hit
PTHR12656:SF12, PTHR12656:SF12, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01388, ARID, 1 hit
PF12031, BAF250_C, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00501, BRIGHT, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46774, SSF46774, 1 hit
SSF48371, SSF48371, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51011, ARID, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

K7GH06-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDQMGKMRPQ PYGGSNPYTQ QQGPQTGPQQ GHGYPGQPYG PQTPQRYPMG
60 70 80 90 100
MQGRTQSAMG SISYAQQIPP YGQQGPSAYG QQSQTPYYNQ QSPHPQQQQS
110 120 130 140 150
PYSQQAPSQT SHSQPSYQQQ QTQSQPPQLP SSQPPYSQQQ SQTPHQQSPS
160 170 180 190 200
PYPQQPPAAQ PHQQSQPPYS QQQSQSPYQQ QQQTPQTASS ALSQQSSSYP
210 220 230 240 250
QSQPQQQPPS AYSQQRFPPP QELSQDSFGS QASSAPSMAS SKGQEDMNLN
260 270 280 290 300
LQSRPSSLPD LSGSIDDLPM GTEGALSPGV STSGISSSQG EQSNPAQSPF
310 320 330 340 350
SPHTSPHLPG IRGPSPSPVG SPASVAQSRS GPLSPAAVPG NQMPPRPPSV
360 370 380 390 400
QSDSILHPSM NQSSIVQDRG YMQRTPQMPQ YSSPQPGSAL SPRQSSGGQM
410 420 430 440 450
HAGMGPYQQN SMGSYGPQGA QYGPQGGYPR QPNYNAMPNA NYPSPGMGGS
460 470 480 490 500
INPMGAGSQM HGQTGVPPYT GLPPGRMSHA AMGNRPYGPN MANMPPQVGT
510 520 530 540 550
GMCPPPGGMN RKAQEAAAAA MHAAANSIQN RPPGYPNMNQ GGMMGTGPPY
560 570 580 590 600
GQGINSMAGM INPQGPPYSM SGNMANNSAG MAASPEMMGL GDVKLTPATK
610 620 630 640 650
MNNKADGTPK TESKSKKSSS STTTNEKITK LYELGGEPER KIWVDRYLAF
660 670 680 690 700
TEEKAMGMTN LPAVGRKPLD LYRLYISVKE IGGLTQVNKN KKWRELATNL
710 720 730 740 750
NVGTSSSAAS SLKKQYIQCL YAFECKIERG EDPPPDIFAA ADSKKSQPKI
760 770 780 790 800
QPPSPAGSGS MQGPQTPQST SSSMAEGGDL KPPTPASTPH SQMPPLPGVR
810 820 830 840 850
SNSVGLQDAF ADGSDPTFQK RNSMTPNPGY QPSMNTSDMM GRMSYEPNKD
860 870 880 890 900
PYSSMRKAPG SDPFMSSGQG PNTGMGDPYN RAAGPGMGNM ALGQRQHYPY
910 920 930 940 950
GGPYDRVRTE PGMGPEGSLG TGTPQANIMP STPDSGMYSP SRCLQQQQQQ
960 970 980 990 1000
QQRHDSYGNQ FSTQGTSSGT PFPSQQTSIY QQQQQNYKRP MDGTYGPPAK
1010 1020 1030 1040 1050
RHEGEMYNVP YSTGQGQAQQ QLPPAQSQQP SQQQSAQPSP QQELYNQYGS
1060 1070 1080 1090 1100
TYPATDRRPA AGPQNQFPFQ FGRDRVSAPP GSTTQQNIPP QMMGGPMQPT
1110 1120 1130 1140 1150
PEGLQQGSLW QGRNEIGYSY PNRQSSGSAA QGPAYHGVNR TDDILHSEQR
1160 1170 1180 1190 1200
VNHEGPWPSH GNRQPPYGPS APVPPLTRPP QPNYQTPPSM QNHIPQVSSP
1210 1220 1230 1240 1250
APLPRPLENR TSPSKSPFLH SGMKMQKAGP PVPASHIASA AVQPPMIRRD
1260 1270 1280 1290 1300
ITFPPGSVEA TQPVLKPRRR LTTKDIGTPE AWRVMMSLKS GLLAESTWAL
1310 1320 1330 1340 1350
DTINILLYDD NSIMTFNLSQ LPGLLELLVE YFRRCLIEIF GILKEYEVGD
1360 1370 1380 1390 1400
PGQKTLLDPE RFCKSSSPHP EEGEEEEAPQ SPNYEEEEEE AAFASKDKAP
1410 1420 1430 1440 1450
VESSEEKLVS KFDKLPVKIV QKNDPFVVDY SDKLGRVQEF ESGLLHWRIG
1460 1470 1480 1490 1500
GGDTTEHIQT HFESKMELLL THKRASCNSV LRKCSAAESN PGTREGENLP
1510 1520 1530 1540 1550
SDGPPEKRIT ATMDDMLSAR PGSLAAAEEE EEVKNSAAAK ESSKFPFGSS
1560 1570 1580 1590 1600
PAQSHRNIKI LEDEPHSKDE TPLCTILDWQ DSLAKRCVCV SNIIRSLSFV
1610 1620 1630 1640 1650
PGNDFEMSKH PGLLLILGKL ILLHHKHPER KQAPLTYEKE EEQDQGVSCN
1660 1670 1680 1690 1700
KVEWWWDCLE MLRENTLVTL ANISGQLDLS PYPESICLPV LDGLLHWAVC
1710 1720 1730 1740 1750
PSAEAQDPFP TLGPNAVLSP QRLVLETLSK LSIQDNNVDL ILATPPFSRL
1760 1770 1780 1790 1800
EKVYSTMVRF LSDRKNPVCR EMAVVLLANL AQGDSLAARA IAVQKGSIGN
1810 1820 1830 1840 1850
LLGFLEDSLA ATQFQQSQAS LMHMQNPPFE STSVDMMRRA ARALLALAKV
1860 1870 1880 1890
DENHSEFTLY ESRLLDISVS PLMNSLVSQV ICDVLFLIGQ S
Length:1,891
Mass (Da):205,094
Last modified:January 9, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i1EC57F3548A4A75C
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
K7GH09K7GH09_PELSI
ARID domain-containing protein
ARID1A
1,899Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AGCU01202139 Genomic DNA No translation available.
AGCU01202140 Genomic DNA No translation available.
AGCU01202141 Genomic DNA No translation available.
AGCU01202142 Genomic DNA No translation available.
AGCU01202143 Genomic DNA No translation available.
AGCU01202144 Genomic DNA No translation available.

NCBI Reference Sequences

More...
RefSeqi
XP_006139209.1, XM_006139147.2

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSPSIT00000019658; ENSPSIP00000019567; ENSPSIG00000017317

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
102444041

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pss:102444041

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGCU01202139 Genomic DNA No translation available.
AGCU01202140 Genomic DNA No translation available.
AGCU01202141 Genomic DNA No translation available.
AGCU01202142 Genomic DNA No translation available.
AGCU01202143 Genomic DNA No translation available.
AGCU01202144 Genomic DNA No translation available.
RefSeqiXP_006139209.1, XM_006139147.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsembliENSPSIT00000019658; ENSPSIP00000019567; ENSPSIG00000017317
GeneIDi102444041
KEGGipss:102444041

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
8289

Phylogenomic databases

GeneTreeiENSGT00940000155194
KOiK11653
OrthoDBi256110at2759

Family and domain databases

Gene3Di1.10.150.60, 1 hit
1.25.10.10, 1 hit
InterProiView protein in InterPro
IPR001606, ARID_dom
IPR036431, ARID_dom_sf
IPR011989, ARM-like
IPR016024, ARM-type_fold
IPR021906, BAF250/Osa
IPR033388, BAF250_C
IPR030094, BAF250a
PANTHERiPTHR12656, PTHR12656, 1 hit
PTHR12656:SF12, PTHR12656:SF12, 1 hit
PfamiView protein in Pfam
PF01388, ARID, 1 hit
PF12031, BAF250_C, 1 hit
SMARTiView protein in SMART
SM00501, BRIGHT, 1 hit
SUPFAMiSSF46774, SSF46774, 1 hit
SSF48371, SSF48371, 1 hit
PROSITEiView protein in PROSITE
PS51011, ARID, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiK7GH06_PELSI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: K7GH06
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 9, 2013
Last sequence update: January 9, 2013
Last modified: August 12, 2020
This is version 52 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again