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Protein
Submitted name:

116 kDa U5 small nuclear ribonucleoprotein component

Gene

EFTUD2

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
116 kDa U5 small nuclear ribonucleoprotein componentImported
Gene namesi
Name:EFTUD2Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 17

Organism-specific databases

EuPathDBiHostDB:ENSG00000108883.12
HGNCiHGNC:30858 EFTUD2

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000108883

PTM / Processingi

Proteomic databases

MaxQBiK7EIT3
PeptideAtlasiK7EIT3
PRIDEiK7EIT3

Expressioni

Gene expression databases

BgeeiENSG00000108883 Expressed in 196 organ(s), highest expression level in skeletal muscle tissue
ExpressionAtlasiK7EIT3 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliK7EIT3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 110EFTUD2InterPro annotationAdd BLAST108

Phylogenomic databases

eggNOGiKOG0469 Eukaryota
COG0480 LUCA
GeneTreeiENSGT00930000150948

Family and domain databases

InterProiView protein in InterPro
IPR031950 EFTUD2_N
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF16004 EFTUD2, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 6 potential isoforms that are computationally mapped.Show allAlign All

K7EIT3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDTDLYDEFG NYIGPELDSD EDDDELGRET KDLDEMDDDD DDDDVGDHDD
60 70 80 90 100
DHPGMEVVLH EDKKYYPTAE EVYGPEVETI VQEEDTQPLT EPIIKPVKTK
110 120 130 140
KFTLMEQTLP VTVYEMDFLA DLMDNSELIR NVTLCGHLHH GKTCFVDC
Length:148
Mass (Da):17,006
Last modified:January 9, 2013 - v1
Checksum:iCC303C95C8CF6062
GO

Computationally mapped potential isoform sequencesi

There are 6 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q15029U5S1_HUMAN
116 kDa U5 small nuclear ribonucleo...
EFTUD2 KIAA0031, SNRP116
972Annotation score:
K7EP67K7EP67_HUMAN
116 kDa U5 small nuclear ribonucleo...
EFTUD2
223Annotation score:
K7EJ74K7EJ74_HUMAN
116 kDa U5 small nuclear ribonucleo...
EFTUD2
134Annotation score:
K7EIV5K7EIV5_HUMAN
116 kDa U5 small nuclear ribonucleo...
EFTUD2
106Annotation score:
K7EQ26K7EQ26_HUMAN
116 kDa U5 small nuclear ribonucleo...
EFTUD2
33Annotation score:
K7ERJ5K7ERJ5_HUMAN
116 kDa U5 small nuclear ribonucleo...
EFTUD2
38Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei148Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC015936 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000593072; ENSP00000464882; ENSG00000108883
UCSCiuc060gcx.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC015936 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliK7EIT3
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiK7EIT3
PeptideAtlasiK7EIT3
PRIDEiK7EIT3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000593072; ENSP00000464882; ENSG00000108883
UCSCiuc060gcx.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000108883.12
HGNCiHGNC:30858 EFTUD2
OpenTargetsiENSG00000108883
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0469 Eukaryota
COG0480 LUCA
GeneTreeiENSGT00930000150948

Miscellaneous databases

ChiTaRSiEFTUD2 human

Gene expression databases

BgeeiENSG00000108883 Expressed in 196 organ(s), highest expression level in skeletal muscle tissue
ExpressionAtlasiK7EIT3 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR031950 EFTUD2_N
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF16004 EFTUD2, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiK7EIT3_HUMAN
AccessioniPrimary (citable) accession number: K7EIT3
Entry historyiIntegrated into UniProtKB/TrEMBL: January 9, 2013
Last sequence update: January 9, 2013
Last modified: November 7, 2018
This is version 50 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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