Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
We will be switching to the new UniProt website on Tuesday, June 28. Please explore and share your feedback. Take me to UniProt BETA

UniProtKB - K1L960 (K1L960_9BACT)

Entry version 27 (19 Jan 2022)
Sequence version 1 (28 Nov 2012)
Previous versions | rss
Add a publicationFeedback
Protein
Submitted name:

ABC-type transport system involved in multi-copper enzyme maturation, permease component

Gene

B879_00242

Organism
Cecembia lonarensis LW9
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		CLON1225176:G1HA2-245-MONOMER

Protein family/group databases

Transport Classification Database

More...TCDBi		3.A.1.145.3, the atp-binding cassette (abc) superfamily

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
ABC-type transport system involved in multi-copper enzyme maturation, permease componentImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:B879_00242Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCecembia lonarensis LW9Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1225176 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Bacteroidetes › Cytophagia › Cytophagales › Cyclobacteriaceae › Cecembia ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000004478 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei59 – 78HelicalSequence analysisAdd BLAST20
Transmembranei106 – 129HelicalSequence analysisAdd BLAST24
Transmembranei149 – 169HelicalSequence analysisAdd BLAST21
Transmembranei176 – 196HelicalSequence analysisAdd BLAST21
Transmembranei243 – 262HelicalSequence analysisAdd BLAST20
Transmembranei321 – 340HelicalSequence analysisAdd BLAST20
Transmembranei360 – 379HelicalSequence analysisAdd BLAST20
Transmembranei405 – 429HelicalSequence analysisAdd BLAST25
Transmembranei449 – 466HelicalSequence analysisAdd BLAST18
Transmembranei471 – 490HelicalSequence analysisAdd BLAST20
Transmembranei521 – 542HelicalSequence analysisAdd BLAST22
Transmembranei562 – 584HelicalSequence analysisAdd BLAST23

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cell membraneARBA annotation, Membrane

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini869 – 1048Peptidase_M1InterPro annotationAdd BLAST180

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisARBA annotation

Phylogenomic databases

Database of Orthologous Groups

More...OrthoDBi		771837at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.10.390.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR032688, ABC2_membrane_2
IPR014782, Peptidase_M1_dom
IPR027268, Peptidase_M4/M1_CTD_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF12679, ABC2_membrane_2, 1 hit
PF01433, Peptidase_M1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

K1L960-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFVFLKKELK TWIKSPMLWI FFLIIGLLVF GAVSSDDIQI GGASTSVKKN 
        60         70         80         90        100
APSVIQQYYG IMSLIALLMT TAFMNATANR DFESGFSGIL FSYPIKRSSY 
       110        120        130        140        150
FFGKFLGAYL IALIPLLGIS VGALVGPLMP WADPNRFGPV YWEGHIQGFL 
       160        170        180        190        200
SFGIPNTFII GVLTFALAVT FRNNMVSYIG AMGLLVLYAI AGNFIADIEK 
       210        220        230        240        250
EWLANLLDPF GFYPVGLANK YATVEELNTT AVFLKGDLLI NRLVWVGVAA 
       260        270        280        290        300
AFLLLLYTRF SFQQKNEKVK KEKKVTKELS ESSAVLERPA VTIDSGNKFS 
       310        320        330        340        350
FAVFGRLVWF ELKAIVKNQT FLIILIIGII NLITGLTFFT GRYGSSNYPL 
       360        370        380        390        400
TYDVIDSISG AFYLFLIGII IFYSGVLVWR DRDAHLDEIK DATPAATGFF 
       410        420        430        440        450
LSSKILALLI SVQLILMTTI VIGIIAQSFY GYFNFELGVY ARSLLVNDFL 
       460        470        480        490        500
FFTYLTVLAV FFHYLINNRY IAYFVFVVFI IASDYVLELL KIESLMVSYG 
       510        520        530        540        550
AVSRGSYSDV NGFGPWATAT AWFQAYWGAF ALLLVYVAYL FFMRGKTTAL 
       560        570        580        590        600
AGRWKDAQER FVGSKAVFFV FIAAFLAIGA HVYYNTQVLN TYKTSKEWED 
       610        620        630        640        650
IRVAYEETYK VHENIPQPKW VSMDYRIELY PEDRDLTFEV VGVMENRTDG 
       660        670        680        690        700
PISELHFTMT DSKDKLEISI EGASIQLDDD QLGYRIYELA RPLQPGEQLT 
       710        720        730        740        750
MKVSGEKRTQ GFENRVTNTS ILKNGSFFYS YEMVPSFGYQ ASNELSDRNK 
       760        770        780        790        800
RRKRGLPEKK RMPVLDENNL EARNFHYIGK DSDWITVKSV IGTSPNQIAV 
       810        820        830        840        850
SPGKLVREWE ENGRKYFQYE QEAPSVHFTS FLSAAYQVER ERWKDVAIEV 
       860        870        880        890        900
YYVPGHEYNI PNFISAMSQS LDYYTAHFGP YDHSQLRIVE FPRYAGFAQS 
       910        920        930        940        950
FPGTMPYSER IGFITDLRKV TEDDIDLVFY VTAHETAHQY WAHQVIAANM 
       960        970        980        990       1000
RGAELLMEAI TQYSALMVME KEYGRDKMRK FLRYEMDGYL RGRGSEFVAE 
      1010       1020       1030       1040       1050
RPLVETEQQG YIHYEKGSVA MYYLKEMIGE AQVNAALRQL IEEFKHQKPP 
      1060       1070       1080       1090       1100
YPTSMDAVRV FRAHTPDSLQ YVIDDLFLNI TLFSNRVLDA NYTQEGEEYI 
      1110       1120       1130       1140       1150
VEFTTESKKF RSDSLGKETA IPIADFIDVG VFGFTENKNL LGDPLVYERL 
      1160       1170       1180       1190 
KVTQEGNTFK FRTKEKPHFV GIDPYNYLID RVPGDNVKKV SLLD
Length:1,194
Mass (Da):136,249
Last modified:November 28, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC1E685CC0A96E1DB
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AMGM01000002 Genomic DNA Translation: EKB51191.1

NCBI Reference Sequences

More...RefSeqi		WP_009183296.1, NZ_AMGM01000002.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		EKB51191; EKB51191; B879_00242

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|1225176.3.peg.259

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AMGM01000002 Genomic DNA Translation: EKB51191.1
RefSeqiWP_009183296.1, NZ_AMGM01000002.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein family/group databases

TCDBi3.A.1.145.3, the atp-binding cassette (abc) superfamily

Genome annotation databases

EnsemblBacteriaiEKB51191; EKB51191; B879_00242
PATRICifig|1225176.3.peg.259

Phylogenomic databases

OrthoDBi771837at2

Enzyme and pathway databases

BioCyciCLON1225176:G1HA2-245-MONOMER

Family and domain databases

Gene3Di1.10.390.10, 1 hit
InterProiView protein in InterPro
IPR032688, ABC2_membrane_2
IPR014782, Peptidase_M1_dom
IPR027268, Peptidase_M4/M1_CTD_sf
PfamiView protein in Pfam
PF12679, ABC2_membrane_2, 1 hit
PF01433, Peptidase_M1, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiK1L960_9BACT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: K1L960
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: January 19, 2022
This is version 27 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again