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Entry version 26 (11 Dec 2019)
Sequence version 1 (28 Nov 2012)
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Protein
Submitted name:

Putative exodeoxyribonuclease V

Gene

recD

Organism
Lactobacillus casei W56
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Putative exodeoxyribonuclease VImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:recDImported
ORF Names:BN194_22190Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiLactobacillus casei W56Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1215914 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000003734 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini139 – 213HHH_4InterPro annotationAdd BLAST75
Domaini675 – 719UvrD_C_2InterPro annotationAdd BLAST45

Phylogenomic databases

KEGG Orthology (KO)

More...
KOi
K03581

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR027417 P-loop_NTPase
IPR029493 RecD-like_HHH
IPR027785 UvrD-like_helicase_C

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF14490 HHH_4, 1 hit
PF13538 UvrD_C_2, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

K0MWZ9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRTALKMTLT QEATITGDMG YYNRRAIITA DLVYDDAGSL RYNKPSYKLA
60 70 80 90 100
RLHFGLPKEP RRQWQLIDTL LVHQPTVRRR LHEHFADDTP ILTIFSTDQV
110 120 130 140 150
KPDSVPGIGP ATIKKIATAI RGKLEIAVLA NHWGKALSSM TYEKIWLAYK
160 170 180 190 200
DANLAMQSID ANPYLLMSVA QLDFKKVDTF AKTRGIAAND PHRLTAGLQY
210 220 230 240 250
IFRTAVLTQG LTYITITWFR QQAATLLAVR EADLKMFADP QEALQYGFLL
260 270 280 290 300
NEQYGLVTSC DMFATEGSVA RIIKVAQKTA EPLMAPDELD DALDQFLDRF
310 320 330 340 350
HLTINDQQRA AFQNVNRHGL SVLNGSAGTG KTWLTDLLVR FFNAQAKGKS
360 370 380 390 400
VLLAPTGRAA KVLAKYTHEP AATIHAYLHL LPGEETGQFD ADADWETFGD
410 420 430 440 450
ARLIVVDESS MLTTPLAYTV LKNVNFKKAH VLFVGDVFQL PPIGPGNFLK
460 470 480 490 500
DCLDDEQVAA TTLTRVYRQD SQSGVLALAN RIRERLALPF GPDDDRYVSG
510 520 530 540 550
NVALCNQRNA GRVFDAGVKA YQDALVKSGQ QIDAQLLIVN KNIGATGRLR
560 570 580 590 600
FNAELQALVN PAKNGEPEYI SSYVDPVTNQ KHHLRLNDRV MILKNDKHVP
610 620 630 640 650
LVDPKTWERR AVLGENGLQQ TDDFGTKRWR ETIVANGDTG VVAHIDTKRH
660 670 680 690 700
FVVVQIGQQY CYYSFGSVPR DLTLAYAITV HKAQGGQADT VIAIVNGADM
710 720 730 740 750
MLNAQSFYTA LTRTQQQFIF FGDFRVLLAR TKIYPIDARH DLLGSFLSGQ
760 770 780 790 800
LTVDTFSRYT FDQVLAWLDK RHAERLSTRP ALEAEEVKPS EQPFSVRYAE
810 820
QLDILDQIVD EVAQLPARKP ARDV
Length:824
Mass (Da):92,171
Last modified:November 28, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6B272A2F8F8E41BC
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
HE970764 Genomic DNA Translation: CCK23166.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
CCK23166; CCK23166; BN194_22190

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
lcw:BN194_22190

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|1215914.3.peg.2314

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE970764 Genomic DNA Translation: CCK23166.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiCCK23166; CCK23166; BN194_22190
KEGGilcw:BN194_22190
PATRICifig|1215914.3.peg.2314

Phylogenomic databases

KOiK03581

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR029493 RecD-like_HHH
IPR027785 UvrD-like_helicase_C
PfamiView protein in Pfam
PF14490 HHH_4, 1 hit
PF13538 UvrD_C_2, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiK0MWZ9_LACCA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: K0MWZ9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: December 11, 2019
This is version 26 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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