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Entry version 42 (29 Sep 2021)
Sequence version 1 (28 Nov 2012)
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Protein

GH115_C domain-containing protein

Gene

AXY_23000

Organism
Amphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolaseARBA annotation

Enzyme and pathway databases

BRENDA Comprehensive Enzyme Information System

More...
BRENDAi
3.2.1.131, 299

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
GH115_C domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:AXY_23000Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiAmphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri698758 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeAmphibacillus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006294 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
698758.AXY_23000

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
K0J4X5

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini784 – 960GH115_CInterPro annotationAdd BLAST177

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502Z7KK, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_004852_0_0_9

Identification of Orthologs from Complete Genome Data

More...
OMAi
PWYWFAD

Family and domain databases

Conserved Domains Database

More...
CDDi
cd14948, BACON, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.20.20.520, 1 hit
3.30.379.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR024361, BACON
IPR031924, GH115
IPR041437, GH115_C
IPR042301, GH115_sf
IPR029018, Hex-like_dom2

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF17829, GH115_C, 1 hit
PF15979, Glyco_hydro_115, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

K0J4X5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDFTLNQEML MTDTKSGALF YQEEEALSGV RKIANKVMHD VELVFGYQPE
60 70 80 90 100
ATKDRDMLSR HAVLYGTVGH SPLLDELNKK ELIDLTEIAG KREVFLFQVV
110 120 130 140 150
DQPIQGVEKA LVIAGSDKRG TIYGLFHLSE KLGVSPLVDW SGVLPARKES
160 170 180 190 200
FSLKGDYKYV SKEPSVKYRG FFINDEWPAF GNWSAKNFGG FNAEMYDHVF
210 220 230 240 250
ELLLRLKGNY LWPAMWSARF NDDGPGLANV ELADEYGVIM GASHHEPCLR
260 270 280 290 300
YGEEYKYLRG PDSIYGDAWN FITNREGITK FWEDGLKRTG HFENIITIGM
310 320 330 340 350
RGEADTKIMG EDATLEDNIN LLRDVIQTQN KLIKEHVNPN LKEVPRMLAL
360 370 380 390 400
YKEVEPFFYG DENTPGLINS EELEDVILML CDDNHGNLRT LPTEDMRKHS
410 420 430 440 450
GGYGMYYHFD YHGGPVSYEW INSSYLPKIW EQMTMAYDFG VRDLWIVNVG
460 470 480 490 500
DIATQELPLS FFLDLAYDFD KWGTNAINKT DDYTKQWIEQ QFAGVFNLEQ
510 520 530 540 550
KDKVFELLNG YTKIAHNRRP EAMNVDVYHP VNYHETDQLL DRIDHLLGLA
560 570 580 590 600
EELYQEVDQQ HFTAYFALVY YPTVGNLNLQ KMWLLNGKNK YAAQLNLIEA
610 620 630 640 650
NKLAEQVKAC LKRDQEIVDE YHTIADGKFY GMGLSEHIGF VHWNEDENKN
660 670 680 690 700
PVLSYVLPVN KPRLLVSIDG TELRSEGSPW HVNTLPLVDF LEPDVNQASF
710 720 730 740 750
TISSVSEKKA EYHISTDQDW LSCSAANGVL DGKNKLSETI HVFVDRDGLA
760 770 780 790 800
DQAEGRITVK TPVGKVTIVV PVVNNDFTNY PDMTFVDTKG YISIEAEHFA
810 820 830 840 850
TQKATENLDG TLNRFEVLDG YGKTLSAIKA FPTDTHYQVG KDAPFVEYHF
860 870 880 890 900
VTQEAGVYEL EFYLQPSNPV TREGTMYAGI QVNENDVDVI NVLPDGYHVD
910 920 930 940 950
GPHWGIDVIN NIRTTKTKIT CEQGLNKLRI YAVSPGFALE KIVIYPDGKK
960
LANSYLGPNE TYYVGR
Length:966
Mass (Da):109,962
Last modified:November 28, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC1FAE5C1FCEA43CD
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AP012050 Genomic DNA Translation: BAM48432.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
BAM48432; BAM48432; AXY_23000

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
axl:AXY_23000

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|698758.3.peg.2308

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012050 Genomic DNA Translation: BAM48432.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
6NPSX-ray1.99A/B1-966[»]
SMRiK0J4X5
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

STRINGi698758.AXY_23000

Genome annotation databases

EnsemblBacteriaiBAM48432; BAM48432; AXY_23000
KEGGiaxl:AXY_23000
PATRICifig|698758.3.peg.2308

Phylogenomic databases

eggNOGiENOG502Z7KK, Bacteria
HOGENOMiCLU_004852_0_0_9
OMAiPWYWFAD

Enzyme and pathway databases

BRENDAi3.2.1.131, 299

Family and domain databases

CDDicd14948, BACON, 1 hit
Gene3Di3.20.20.520, 1 hit
3.30.379.10, 1 hit
InterProiView protein in InterPro
IPR024361, BACON
IPR031924, GH115
IPR041437, GH115_C
IPR042301, GH115_sf
IPR029018, Hex-like_dom2
PfamiView protein in Pfam
PF17829, GH115_C, 1 hit
PF15979, Glyco_hydro_115, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiK0J4X5_AMPXN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: K0J4X5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: September 29, 2021
This is version 42 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Reference proteomeImported
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