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Entry version 49 (03 Jul 2019)
Sequence version 1 (31 Oct 2012)
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Protein
Submitted name:

Collagen type XII alpha 1 chain

Gene

COL12A1

Organism
Canis lupus familiaris (Dog) (Canis familiaris)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-CFA-1442490 Collagen degradation
R-CFA-1650814 Collagen biosynthesis and modifying enzymes
R-CFA-8948216 Collagen chain trimerization

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Collagen type XII alpha 1 chainImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:COL12A1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCanis lupus familiaris (Dog) (Canis familiaris)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9615 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaCanidaeCanis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002254 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 12

Organism-specific databases

Vertebrate Gene Nomenclature Database

More...
VGNCi
VGNC:39458 COL12A1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 23Sequence analysisAdd BLAST23
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500382565424 – 3065Sequence analysisAdd BLAST3042

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
J9P6G0

PRoteomics IDEntifications database

More...
PRIDEi
J9P6G0

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSCAFG00000002702 Expressed in 3 organ(s), highest expression level in adult mammalian kidney

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
J9P6G0

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini27 – 117Fibronectin type-IIIInterPro annotationAdd BLAST91
Domaini140 – 316VWFAInterPro annotationAdd BLAST177
Domaini336 – 426Fibronectin type-IIIInterPro annotationAdd BLAST91
Domaini440 – 616VWFAInterPro annotationAdd BLAST177
Domaini634 – 723Fibronectin type-IIIInterPro annotationAdd BLAST90
Domaini725 – 819Fibronectin type-IIIInterPro annotationAdd BLAST95
Domaini820 – 905Fibronectin type-IIIInterPro annotationAdd BLAST86
Domaini907 – 998Fibronectin type-IIIInterPro annotationAdd BLAST92
Domaini999 – 1087Fibronectin type-IIIInterPro annotationAdd BLAST89
Domaini1089 – 1179Fibronectin type-IIIInterPro annotationAdd BLAST91
Domaini1199 – 1371VWFAInterPro annotationAdd BLAST173
Domaini1387 – 1476Fibronectin type-IIIInterPro annotationAdd BLAST90
Domaini1477 – 1567Fibronectin type-IIIInterPro annotationAdd BLAST91
Domaini1568 – 1657Fibronectin type-IIIInterPro annotationAdd BLAST90
Domaini1658 – 1754Fibronectin type-IIIInterPro annotationAdd BLAST97
Domaini1757 – 1851Fibronectin type-IIIInterPro annotationAdd BLAST95
Domaini1852 – 1937Fibronectin type-IIIInterPro annotationAdd BLAST86
Domaini1938 – 2028Fibronectin type-IIIInterPro annotationAdd BLAST91
Domaini2029 – 2119Fibronectin type-IIIInterPro annotationAdd BLAST91
Domaini2120 – 2208Fibronectin type-IIIInterPro annotationAdd BLAST89
Domaini2209 – 2296Fibronectin type-IIIInterPro annotationAdd BLAST88
Domaini2325 – 2498VWFAInterPro annotationAdd BLAST174

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1074 – 1099DisorderedSequence analysisAdd BLAST26
Regioni2285 – 2314DisorderedSequence analysisAdd BLAST30
Regioni2752 – 2898DisorderedSequence analysisAdd BLAST147
Regioni2933 – 3065DisorderedSequence analysisAdd BLAST133

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1076 – 1099PolarSequence analysisAdd BLAST24
Compositional biasi2299 – 2314Pro-richSequence analysisAdd BLAST16
Compositional biasi2780 – 2799Pro-richSequence analysisAdd BLAST20
Compositional biasi2826 – 2840Pro-richSequence analysisAdd BLAST15
Compositional biasi2942 – 2956Pro-richSequence analysisAdd BLAST15
Compositional biasi3020 – 3038Pro-richSequence analysisAdd BLAST19
Compositional biasi3050 – 3065PolarSequence analysisAdd BLAST16

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IS7D Eukaryota
ENOG4111RUM LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000154923

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
J9P6G0

Identification of Orthologs from Complete Genome Data

More...
OMAi
FQIQNFD

Database of Orthologous Groups

More...
OrthoDBi
67372at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00063 FN3, 18 hits

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.40.10, 18 hits
3.40.50.410, 4 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008160 Collagen
IPR013320 ConA-like_dom_sf
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR013783 Ig-like_fold
IPR001791 Laminin_G
IPR002035 VWF_A
IPR036465 vWFA_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01391 Collagen, 4 hits
PF00041 fn3, 18 hits
PF00092 VWA, 4 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00060 FN3, 18 hits
SM00210 TSPN, 1 hit
SM00327 VWA, 4 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49265 SSF49265, 10 hits
SSF49899 SSF49899, 1 hit
SSF53300 SSF53300, 4 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50853 FN3, 18 hits
PS50234 VWFA, 4 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

J9P6G0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRTGLPPALA ALGAALLLSS IEAEVDPPSD LNFKIIDENT VHMSWARPAD
60 70 80 90 100
PIVGYRITVD PTTDGPTKEF TLAASTTETL LSDLIPEIEY VVTITSYDEV
110 120 130 140 150
EESVPVIGQL TIQTGGPTKP GEKKPGKPEI QKCSVSAWTD LVFLVDGSWS
160 170 180 190 200
VGRNNFKYIL DFIGALVSAF DIGEEKTRVG VVQYSSDTRT EFNLNQYYRT
210 220 230 240 250
DELLAAIKKI PYKGGNTMTG DAIDYLIKNT FTESAGARVG FPKVAIIITD
260 270 280 290 300
GKSQDEVEIP ARELRNIGVE VFSLGIKAAD AKELKQIAST PSLNHVFNVA
310 320 330 340 350
NFDAIVDIQN EIISQVCSGV DEQLGELVSG EEVIEPPSNL VATEVSSKYI
360 370 380 390 400
KLSWSPSPSS VTGYKVLLTP MTAGSRQHAL SVGPQTTTLS VRDLSADTEY
410 420 430 440 450
QISISAMKGL TSSEPVSIME KTQPMKVQVE CSRGVDIKAD IVFLVDGSYS
460 470 480 490 500
IGIANFVKVR AFLEVLVKSF EISPNRVQIS LVQYSRDPHT EFTLKKFTKV
510 520 530 540 550
EDIIEAINTF PYRGGSTNTG KAMTYVREKI FVPSKGSRGN VPKVMILITD
560 570 580 590 600
GKSSDAFRDP AIKLRNSDVE IFAVGVKDAV RSELEAIASP PAETHVFTVE
610 620 630 640 650
DFDAFQRISF ELTQSICLRI EQELAAIKKK AYVPPKDLSF SETTSYSFKA
660 670 680 690 700
NWSPAGENVF SYHITYKEAT GDDEVTVVEP ASSTSVVLNN LKPETLYLVN
710 720 730 740 750
VTAEYEDGFS VPLTGEETTV EVKGAPRNLK VTDETTDSFK ITWTQAPGRV
760 770 780 790 800
LRYRIIYKPV ASGESKEVTT PANQRRITLE NLTPDTKYEV SVIPEYFSGP
810 820 830 840 850
GSPLTGNAAT EEVRGTPRDL RVSDPTTSTM KLSWTRAPGK VKQYLVTYIP
860 870 880 890 900
AAGGETQEVT VRGDTTSTVL RGLNEGTQYA LSVTALYASG AGDALYGEGM
910 920 930 940 950
TLEERGSPKD LVTKDITDTS IGAYWTSAPG MVRGYRVSWK SLYDDIETGE
960 970 980 990 1000
KSLPGDAIHT VIENLQPETK YKVSVFAVYS SGEGEPLNGE ATTELSQDSK
1010 1020 1030 1040 1050
TLKVDEETEN TMRVTWKPAP GKVINYRVVY RPRGGGRQMV AKVPPTVTST
1060 1070 1080 1090 1100
VLKRLQPQTT YDITVLPMYK TGEGKLRQGS GTTASRFKSP RNLKTSDPTM
1110 1120 1130 1140 1150
SSFRVTWEPA PGEVKGYKVT FHPTGDDRRL GELVVGPYDN TVVLEELRAG
1160 1170 1180 1190 1200
TTYKVNVFGM FDGGESSPLV GQEMTTLSDT TVMPILSSGM ECLTRAEADI
1210 1220 1230 1240 1250
VLLVDGSWSI GRANFRTVRS FISRIVEVFE IGPKRVQIAL AQYSGDPRTE
1260 1270 1280 1290 1300
WQLNAHRDKK SLLQAVANLP YKGGNTLTGM ALNFIRQQNF RTQAGMRPRA
1310 1320 1330 1340 1350
RKIGVLITDG KSQDDVEAPS KKLKDEGVEL FAIGIKNADE DELKMIATDP
1360 1370 1380 1390 1400
DDTHAYNVAD FESLSKIVDD LTINLCNSVK GPGDLEAPSN LVISERTHRS
1410 1420 1430 1440 1450
LRVSWTPPSD SVDRYKVEYY PVSGGKRQEF YVSRLESSTV LKDLKPETEY
1460 1470 1480 1490 1500
VVNVYSVVED EYSEPLKGTE KTLPVPVVSM NIYDISPTTM HVQWQPVGGA
1510 1520 1530 1540 1550
TGYTLSYEPI NGTEPTKPKE MRVGPTVNDV QLTDLSPNTE YAVTVQAALH
1560 1570 1580 1590 1600
DLTSEPVTAR EVTLPLPKPR DLRLRDVTHS TMNVLWEPAP GKVRKYIVRY
1610 1620 1630 1640 1650
KTPEEDVKEV EVDRSRTSTP LRDLFSQTLY TVDVSAIYDE GESPPVTAQE
1660 1670 1680 1690 1700
TTRTVPAPTN LKITEVTPES FRGTWDHGAS DVSLYRITWA PFGSSDKMET
1710 1720 1730 1740 1750
ILNGDENTLV FENLNPNTLY EVSVTAIYPD ESESDDLTGS ERTPRLIPLT
1760 1770 1780 1790 1800
TQAPKSGPRN LQVYNATSNS LTVKWDPASG RVQKYRITYQ PSTGEGNEQT
1810 1820 1830 1840 1850
TTIGGRQNSV VLQKLKPDTP YTITVSSLYP DGEGGRMTGR GKTKPLNTVR
1860 1870 1880 1890 1900
NLRVYDPSTS TLNVRWDHAE GNPRQYKLFY APTAGGPEEL VPIPGNTNYA
1910 1920 1930 1940 1950
ILRNLQPDTP YTVTVVPVYT EGDGGRTSDT GRTLVRGLAR NVQVYNPTPN
1960 1970 1980 1990 2000
SLDVRWDPAP GPVQQYRIVY SPVAGTRPSE SIVVPGNTRT VHLERLIPDT
2010 2020 2030 2040 2050
PYSVNIVALY SDGEGNPSPG QGRTLPRSGP RNIRVFGETT NSLSVAWDHA
2060 2070 2080 2090 2100
DGPVQQYRII YSPTVGDPID EYTTVPGRRN NVMLQPLQPD TPYKITVIAV
2110 2120 2130 2140 2150
YEDGDGGHLI GNGRTVGLLP PQNIHISDEW YTRFRVSWDP SPSPVLGYKI
2160 2170 2180 2190 2200
VYKPVGSNEP MEAFVGEMTS YTLHNLNPST TYDVNVYAQY DSGLSVPLTD
2210 2220 2230 2240 2250
QGTTLYLNVT DLKTYQIGWD TFCVRWSAHR AATSYRLKLS PADGTRGQEI
2260 2270 2280 2290 2300
TVRGSETSHC FTGLSPDADY GVTVFVQTPN LEGPGVSVKE HTTVKPTEAP
2310 2320 2330 2340 2350
TEPPTPPPPP TIPPARDVCK GAKADIVFLT DASWSIGDDN FNKVVKFIFN
2360 2370 2380 2390 2400
TVGAFDEISP AGIQVSFVQY SDEVKSEFKL NTYNDKAQAL GALQNIRYRG
2410 2420 2430 2440 2450
GNTRTGKALT FIKEKVLTWE SGMRKNVPKV LVVVTDGRSQ DEVKKAALVI
2460 2470 2480 2490 2500
QQSGFSVFVV GVADVDYNEL ANIASKPSER HVFIVDDFES FEKIEDNLIT
2510 2520 2530 2540 2550
FVCETATSSC PLIYLDGYTS PGFKMLEAYN LTEKNFASVP GVSLESGSFP
2560 2570 2580 2590 2600
SYSAYKLQKN AFVNQPTADL HPNGLPSSYT IILLFRLLPE TPTDPFAIWQ
2610 2620 2630 2640 2650
ITDRDYKPQV GVIADPSSKT LSFFNKDIRG EVQTVTFDTD EVKTLFYGSF
2660 2670 2680 2690 2700
HKVHVVVTSK SVKIYIDCYE IIEKDIKEAG NITTDGYEIL GKLLKGERKS
2710 2720 2730 2740 2750
ATFQIQSFDI VCSPVWTSRD RCCDIPSRRD EAKCPALPNA CTCTQDSVGP
2760 2770 2780 2790 2800
PGPPGPAGGP GAKGPRGERG ISGAVGPPGP RGDTGPPGPQ GPPGPQGPNG
2810 2820 2830 2840 2850
LSIPGEQGRQ GMKGDAGEPG LPGRTGTPGL PGPPGPMGPP GDRGFTGKDG
2860 2870 2880 2890 2900
AMGPRGPPGP PGSPGSPGVT GPSGKPGKPG DHGRPGPSGL KGEKGDRGDI
2910 2920 2930 2940 2950
ASQNMMRAVA RQVCEQLISG QMSRFNQMLN QIPNDYHSSR NQPGPPGPPG
2960 2970 2980 2990 3000
PPGSAGARGE PGPGGRPGFP GTPGMQGPPG ERGLPGEKGE RGIGSPGPRG
3010 3020 3030 3040 3050
LPGPPGPQGE SRTGPPGSTG SRGPPGPPGR PGNSGIRGPP GPPGYCDSSQ
3060
CASIPYNGQG YPGSG
Length:3,065
Mass (Da):332,802
Last modified:October 31, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i27BDC30E8834A29A
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F6XWS5F6XWS5_CANLF
Collagen type XII alpha 1 chain
COL12A1
3,061Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AAEX03008462 Genomic DNA No translation available.
AAEX03008463 Genomic DNA No translation available.
AAEX03008464 Genomic DNA No translation available.
AAEX03008465 Genomic DNA No translation available.

NCBI Reference Sequences

More...
RefSeqi
XP_539002.2, XM_539002.5

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSCAFT00000049283; ENSCAFP00000041242; ENSCAFG00000002702

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
481881

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAEX03008462 Genomic DNA No translation available.
AAEX03008463 Genomic DNA No translation available.
AAEX03008464 Genomic DNA No translation available.
AAEX03008465 Genomic DNA No translation available.
RefSeqiXP_539002.2, XM_539002.5

3D structure databases

SMRiJ9P6G0
ModBaseiSearch...

Proteomic databases

PaxDbiJ9P6G0
PRIDEiJ9P6G0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSCAFT00000049283; ENSCAFP00000041242; ENSCAFG00000002702
GeneIDi481881

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
1303
VGNCiVGNC:39458 COL12A1

Phylogenomic databases

eggNOGiENOG410IS7D Eukaryota
ENOG4111RUM LUCA
GeneTreeiENSGT00940000154923
InParanoidiJ9P6G0
OMAiFQIQNFD
OrthoDBi67372at2759

Enzyme and pathway databases

ReactomeiR-CFA-1442490 Collagen degradation
R-CFA-1650814 Collagen biosynthesis and modifying enzymes
R-CFA-8948216 Collagen chain trimerization

Gene expression databases

BgeeiENSCAFG00000002702 Expressed in 3 organ(s), highest expression level in adult mammalian kidney

Family and domain databases

CDDicd00063 FN3, 18 hits
Gene3Di2.60.40.10, 18 hits
3.40.50.410, 4 hits
InterProiView protein in InterPro
IPR008160 Collagen
IPR013320 ConA-like_dom_sf
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR013783 Ig-like_fold
IPR001791 Laminin_G
IPR002035 VWF_A
IPR036465 vWFA_dom_sf
PfamiView protein in Pfam
PF01391 Collagen, 4 hits
PF00041 fn3, 18 hits
PF00092 VWA, 4 hits
SMARTiView protein in SMART
SM00060 FN3, 18 hits
SM00210 TSPN, 1 hit
SM00327 VWA, 4 hits
SUPFAMiSSF49265 SSF49265, 10 hits
SSF49899 SSF49899, 1 hit
SSF53300 SSF53300, 4 hits
PROSITEiView protein in PROSITE
PS50853 FN3, 18 hits
PS50234 VWFA, 4 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiJ9P6G0_CANLF
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: J9P6G0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 31, 2012
Last sequence update: October 31, 2012
Last modified: July 3, 2019
This is version 49 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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