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UniProtKB - J7JB26 (J7JB26_BURCE)

Entry version 31 (02 Dec 2020)
Sequence version 1 (31 Oct 2012)
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Protein
Submitted name:

Rhs element vgr

Gene

GEM_2076

Organism
Burkholderia cepacia GG4
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		BCEP1009846:G1H9M-2139-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Rhs element vgrImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:GEM_2076Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBurkholderia cepacia GG4Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1009846 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia cepacia complex ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000032866 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini492 – 539Phage_base_VInterPro annotationAdd BLAST48
Domaini591 – 690T6SS_VgrInterPro annotationAdd BLAST100
Domaini743 – 901DUF2345InterPro annotationAdd BLAST159

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni468 – 496DisorderedSequence analysisAdd BLAST29
Regioni694 – 716DisorderedSequence analysisAdd BLAST23

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi468 – 486PolyampholyteSequence analysisAdd BLAST19

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_004121_1_6_4

Database of Orthologous Groups

More...OrthoDBi		1880900at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.40.50.230, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR018769, DUF2345_Vgr_C
IPR006531, Gp5/Vgr_OB
IPR028244, T6SS_Rhs_Vgr_dom
IPR006533, T6SS_Vgr_RhsGE
IPR037026, Vgr_OB-fold_dom_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF10106, DUF2345, 1 hit
PF04717, Phage_base_V, 1 hit
PF13296, T6SS_Vgr, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR01646, vgr_GE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

J7JB26-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSTQSDLIQA FFGGRSQHDR FLWLTTPLGA DKLVAESLHG WESLDRGGFR 
        60         70         80         90        100
FQVTALTERP DVPLDKLIGA PILVEWQAAD GQDARRPFHG HVTAAELVGY 
       110        120        130        140        150
NGGLARVRLV VEPWLALLQQ RVDSYNFVNA SVVDISEQIF AHYARGAIVP 
       160        170        180        190        200
AWRWALADPA KYAKRSLTAQ AGEADFAFLE RLWAEEGIFY WFEHEGDAHS 
       210        220        230        240        250
ASLGKHTLVL SDTNERFAPA EPERVGFHQT SDGDPRGGIR QFLNARRWRI 
       260        270        280        290        300
GSVARASWDH RSLSTRPAGV RATGAAVPGE DRDVAGPYAF QTAAIGDQRA 
       310        320        330        340        350
QQQLDAQRVA ALQAEGSGTR RDLRPGLRFA MSNHPSLDAS HAFVCLRVEH 
       360        370        380        390        400
DARANVGADV HGAIAQRLGG IPPLLDATPG GYGSAQALHA AFDATTHDGG 
       410        420        430        440        450
ALMDGDEVYR NRFAALPFDQ AYRPLAPDGH GARVHPVAVM PGPQTTIVVG 
       460        470        480        490        500
AGDPLHTERD HRIRIQHHAQ RGQNSASRED HPRTANAPAD RGAGTWTRMV 
       510        520        530        540        550
TPVGGDNWGG VSVPRVGQEV WTEWLEGQPD RPVAVAALYN GQGNTDAQHN 
       560        570        580        590        600
ALAGGPSSST ANAAAWFAGN DHAAVLTGFK TQDMSASQTG AAGSRQFMLD 
       610        620        630        640        650
DTAGQASARL ATTDHDSGLT LGHIKQVQDN RRLADRGYGA ELSTQAAGAL 
       660        670        680        690        700
RAGAGLLIST APGVNQMDAS AASQVLAQQR EMLQGLADFA RKQGAEPGAS 
       710        720        730        740        750
AAQPGTAAAG GATPPLAAID GLQQSQASIG ATREGSGAGG AGGGGAVAWK 
       760        770        780        790        800
HPHLVAHGAA GVAALTAQSH VWTSGTQTVL SAGRDVQVTV QGKSSIVAKE 
       810        820        830        840        850
GIALYTHGTA GGSRPVPAAG IALHAATGAV TVQAQNAGTL DANAQRTVTV 
       860        870        880        890        900
SSAQASVVLQ SPKRLLLTAA NAFLKMEGND IVIGAPGKAT FHAAQHTLTG 
       910        920        930 
PRSANVQLPS MNKPACVECM RDLAHRHEAI ATRG
Length:934
Mass (Da):97,981
Last modified:October 31, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i60971DCEA56B18DA
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP003774 Genomic DNA Translation: AFQ48493.1

NCBI Reference Sequences

More...RefSeqi		WP_014897350.1, NC_018513.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AFQ48493; AFQ48493; GEM_2076

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		bct:GEM_2076

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|1009846.3.peg.2166

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003774 Genomic DNA Translation: AFQ48493.1
RefSeqiWP_014897350.1, NC_018513.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiAFQ48493; AFQ48493; GEM_2076
KEGGibct:GEM_2076
PATRICifig|1009846.3.peg.2166

Phylogenomic databases

HOGENOMiCLU_004121_1_6_4
OrthoDBi1880900at2

Enzyme and pathway databases

BioCyciBCEP1009846:G1H9M-2139-MONOMER

Family and domain databases

Gene3Di2.40.50.230, 1 hit
InterProiView protein in InterPro
IPR018769, DUF2345_Vgr_C
IPR006531, Gp5/Vgr_OB
IPR028244, T6SS_Rhs_Vgr_dom
IPR006533, T6SS_Vgr_RhsGE
IPR037026, Vgr_OB-fold_dom_sf
PfamiView protein in Pfam
PF10106, DUF2345, 1 hit
PF04717, Phage_base_V, 1 hit
PF13296, T6SS_Vgr, 1 hit
TIGRFAMsiTIGR01646, vgr_GE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiJ7JB26_BURCE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: J7JB26
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 31, 2012
Last sequence update: October 31, 2012
Last modified: December 2, 2020
This is version 31 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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