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Protein

Small nuclear ribonucleoprotein Sm D2

Gene

snrpD2

Organism
Chroomonas mesostigmatica CCMP1168
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoproteinUniRule annotationSAAS annotationImported, Viral nucleoproteinImported
Biological processmRNA processing, mRNA splicingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Small nuclear ribonucleoprotein Sm D2UniRule annotation
Short name:
Sm-D2UniRule annotation
Alternative name(s):
snRNP core protein D2UniRule annotation
Gene namesi
Name:snrpD2Imported
ORF Names:CMESO_314Imported
Encoded oniNucleomorphImported
OrganismiChroomonas mesostigmatica CCMP1168Imported
Taxonomic identifieri1195612 [NCBI]
Taxonomic lineageiEukaryotaCryptophytaPyrenomonadalesChroomonadaceaeChroomonas

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

NucleomorphImported, NucleusUniRule annotation, Virion

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 84SmInterPro annotationAdd BLAST76

Sequence similaritiesi

Belongs to the snRNP core protein family.UniRule annotation

Family and domain databases

InterProiView protein in InterPro
IPR001163 LSM_dom_euk/arc
IPR010920 LSM_dom_sf
IPR027248 Sm_D2
PANTHERiPTHR12777 PTHR12777, 1 hit
PfamiView protein in Pfam
PF01423 LSM, 1 hit
SMARTiView protein in SMART
SM00651 Sm, 1 hit
SUPFAMiSSF50182 SSF50182, 1 hit

Sequencei

Sequence statusi: Complete.

J7G1X7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDKNESPLDF FSEIIIGNRP VMIFIRNNKK LLGYIRAFDR HMNLIIDNGK
60 70 80
EIWTSKCSKK KVKFHEKFFP KLVLRGDSII LIVRV
Length:85
Mass (Da):10,065
Last modified:October 31, 2012 - v1
Checksum:iE2EEA49294385A1E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003681 Genomic DNA Translation: AFP65482.1

Genome annotation databases

EnsemblProtistsiAFP65482; AFP65482; CMESO_314

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003681 Genomic DNA Translation: AFP65482.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiAFP65482; AFP65482; CMESO_314

Family and domain databases

InterProiView protein in InterPro
IPR001163 LSM_dom_euk/arc
IPR010920 LSM_dom_sf
IPR027248 Sm_D2
PANTHERiPTHR12777 PTHR12777, 1 hit
PfamiView protein in Pfam
PF01423 LSM, 1 hit
SMARTiView protein in SMART
SM00651 Sm, 1 hit
SUPFAMiSSF50182 SSF50182, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiJ7G1X7_9CRYP
AccessioniPrimary (citable) accession number: J7G1X7
Entry historyiIntegrated into UniProtKB/TrEMBL: October 31, 2012
Last sequence update: October 31, 2012
Last modified: November 7, 2018
This is version 24 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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