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UniProtKB - J3QQ16 (J3QQ16_MOUSE)

Entry version 71 (07 Apr 2021)
Sequence version 1 (03 Oct 2012)
Previous versions | rss
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Protein
Submitted name:

Collagen, type VI, alpha 3

Gene

Col6a3

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processCell adhesionARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Collagen, type VI, alpha 3Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Col6a3Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...MGIi		MGI:88461, Col6a3

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Extracellular matrixARBA annotation, Secreted

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 25Sequence analysisAdd BLAST25
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500377732526 – 2677Sequence analysisAdd BLAST2652

Keywords - PTMi

Disulfide bondARBA annotation

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		J3QQ16

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		J3QQ16

MaxQB - The MaxQuant DataBase

More...MaxQBi		J3QQ16

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		J3QQ16

PeptideAtlas

More...PeptideAtlasi		J3QQ16

PRoteomics IDEntifications database

More...PRIDEi		J3QQ16

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		314779

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSMUSG00000048126, Expressed in zone of skin and 258 other tissues

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		J3QQ16

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini37 – 212VWFAInterPro annotationAdd BLAST176
Domaini229 – 401VWFAInterPro annotationAdd BLAST173
Domaini419 – 595VWFAInterPro annotationAdd BLAST177
Domaini623 – 794VWFAInterPro annotationAdd BLAST172
Domaini826 – 999VWFAInterPro annotationAdd BLAST174
Domaini1029 – 1206VWFAInterPro annotationAdd BLAST178
Domaini1228 – 1414VWFAInterPro annotationAdd BLAST187
Domaini1792 – 1971VWFAInterPro annotationAdd BLAST180
Domaini2009 – 2205VWFAInterPro annotationAdd BLAST197
Domaini2500 – 2591Fibronectin type-IIIInterPro annotationAdd BLAST92
Domaini2621 – 2671BPTI/Kunitz inhibitorInterPro annotationAdd BLAST51

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1003 – 1023DisorderedSequence analysisAdd BLAST21
Regioni1432 – 1759DisorderedSequence analysisAdd BLAST328
Regioni2271 – 2440DisorderedSequence analysisAdd BLAST170
Regioni2474 – 2517DisorderedSequence analysisAdd BLAST44

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1498 – 1514PolyampholyteSequence analysisAdd BLAST17
Compositional biasi1522 – 1559PolyampholyteSequence analysisAdd BLAST38
Compositional biasi1681 – 1703PolyampholyteSequence analysisAdd BLAST23
Compositional biasi2278 – 2307Pro-richSequence analysisAdd BLAST30
Compositional biasi2339 – 2410Pro-richSequence analysisAdd BLAST72

Keywords - Domaini

CollagenARBA annotation, SignalSequence analysis

Phylogenomic databases

Ensembl GeneTree

More...GeneTreei		ENSGT00940000156462

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_000182_1_0_1

Family and domain databases

Conserved Domains Database

More...CDDi		cd00063, FN3, 1 hit
cd00109, KU, 1 hit
cd01481, vWA_collagen_alpha3-VI-like, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.60.40.10, 1 hit
3.40.50.410, 9 hits
4.10.410.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR008160, Collagen
IPR003961, FN3_dom
IPR036116, FN3_sf
IPR013783, Ig-like_fold
IPR002223, Kunitz_BPTI
IPR036880, Kunitz_BPTI_sf
IPR020901, Prtase_inh_Kunz-CS
IPR041900, vWA_collagen_alpha3-VI-like
IPR002035, VWF_A
IPR036465, vWFA_dom_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF01391, Collagen, 2 hits
PF00014, Kunitz_BPTI, 1 hit
PF00092, VWA, 8 hits

Protein Motif fingerprint database; a protein domain database

More...PRINTSi		PR00759, BASICPTASE

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00131, KU, 1 hit
SM00327, VWA, 9 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF49265, SSF49265, 1 hit
SSF53300, SSF53300, 9 hits
SSF57362, SSF57362, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00280, BPTI_KUNITZ_1, 1 hit
PS50279, BPTI_KUNITZ_2, 1 hit
PS50853, FN3, 1 hit
PS50234, VWFA, 9 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.Show allAlign All

J3QQ16-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRKHRHLPLV AVFSLLLSGI ATTHAQQHGV MEVNKRDIVF LVDGSSSLGP 
        60         70         80         90        100
SNFNAIRDFV TRVIQRLEIG QDLVQVSVAQ YADTVKPEFY LNSYTNKRDA 
       110        120        130        140        150
ITAVRKMRAL NGSALYTGSS LDFVRNNLFT SSAGHRAAEG VPKLLVLITG 
       160        170        180        190        200
GKSLDEVSQP AQELKRGSIM ALAVGSKAAD EDELKEIAFD SSLVFIPAEF 
       210        220        230        240        250
RPAPLQNMLP SLMAPLRTLT GTTEESKRDI LFLFDGSVNV LGQFPAVRDF 
       260        270        280        290        300
LYRIIEELDV KPDGTRVAIA QFSDDVRLES RFSEHQTKAE ILNLVKKMKL 
       310        320        330        340        350
KTGKALNLGY ALDYALRNIF VRSAGSRIED NVQQFLVLLV AGRSSDAVAG 
       360        370        380        390        400
PASSLKQRGV VPFIFQAKNA NPSELEQIVL SPAFILAAES LPKIGDLQSQ 
       410        420        430        440        450
IVSLLKAEQG SGPVSGEKDV VFLIDGSEGV RSGFPLLKDF VQRVVESLDV 
       460        470        480        490        500
GPDRVRVALV QYSDRTRPEF YLNSHMDQQG VISAIRRLTL LGGPTPNTGA 
       510        520        530        540        550
ALEFVLRNIL TSSTGSRIAE GVPQLLIVLT AEPSGDDVRG PSVVLKQGGA 
       560        570        580        590        600
VPIGIGIGNA DISEMQTISF IPDFAVAIPT FRELGTIQQV ISERVIQLNR 
       610        620        630        640        650
EELSSLKPIL TPSTGAGVGS KKDVVFLIDG SRNAGPEFQY IRTLIERIVE 
       660        670        680        690        700
YLDIGFDTTR VAVIQFSEDS KMEFPLNAHF SKDEVQNAVR RLRPKGGSQV 
       710        720        730        740        750
YIGNALEYVL KNIFQRPLGS RIEEGVPQFL VLISSGKSDD EVDDSAVELK 
       760        770        780        790        800
QFGVAPLTIA RHTDQEELVK ISLSPEYVYS VSTFRELPRL EQKLLTPITT 
       810        820        830        840        850
LTSQQIHQIL ASTRYPPSVV ESDAADIVFL IDSSDAVKPD GIAHIRDFVS 
       860        870        880        890        900
RIVRRLNIGP SKVRIGVVQF SNDVFPEFYL KTHKSQSSVL EAIRRLRFKG 
       910        920        930        940        950
GSPLNTGRAL EFVARNLFVK SAGSRIEDGV PQHLVLFLGG KSQDDVARHA 
       960        970        980        990       1000
QVISSSGIVS LGIGDRNIDR TDLQTITNDP RLVFTVREFR ELPNIEERVM 
      1010       1020       1030       1040       1050
LSFGPSGATP QPPGVDLPSP SRPEKKKADI VFLLDGSINF RRDSFQEVLR 
      1060       1070       1080       1090       1100
FASEIVDTVY EDGDSIRVGL VQYNSDPTDE FFLRDFSTKR QIIDAINKVV 
      1110       1120       1130       1140       1150
YKGGRHANTR VGIEHLLRNH FVPEAGSRLD ERVPQIAFVI TGGKSVEDAQ 
      1160       1170       1180       1190       1200
DVSLALTQKG VKVFAVGVRN IDSEEVGKIA SNSATAFRVG SVQELSELSE 
      1210       1220       1230       1240       1250
TVLETLHDAM HETLCPGVTD VSKACNLEVI LGFDGSRDQN VFVSQKGLES 
      1260       1270       1280       1290       1300
KVDIILNRIS QIQRISCSGN QLPTVRVSVM ANTPSGPVEA FDFAEYQPEL 
      1310       1320       1330       1340       1350
FEKFRNMRSQ RPYVLTADTL KLYQNKFRQS SPDTVKVVIH FTDGADGDMA 
      1360       1370       1380       1390       1400
DLYRASEELR QAGAQALILV GLERVANLER LMHLEFGRGF MYDRPLRLNL 
      1410       1420       1430       1440       1450
LDLDYELAEQ LDNIAEKACC GVPCKCSGER GDRGPIGSIG PKGISGEDGY 
      1460       1470       1480       1490       1500
RGYPGDEGGP GERGPPGVNG TQGFQGCPGQ RGVKGSRGFP GEKGELGEIG 
      1510       1520       1530       1540       1550
LDGLDGEEGD KGLPGSSGEK GSPGRRGDKG PKGDKGERGD VGIRGDPGDS 
      1560       1570       1580       1590       1600
GRDSQQRGPK GETGDIGPMG LPGRDGIPGS PGDPGKDGGS GRRGPAGAKG 
      1610       1620       1630       1640       1650
NRGGPGQPGF EGEQGTRGSQ GPPGPIGPPG LIGEQGIPGP RGGGGTAGAP 
      1660       1670       1680       1690       1700
GERGRTGPLG RKGEPGEPGP KGSIGNRGPR GETGDDGRDG VGSEGRRGKK 
      1710       1720       1730       1740       1750
GERGFPGYPG PKGTPGEPGA DGPPGPKGIR GRRGNSGPPG ATGQKGDPGY 
      1760       1770       1780       1790       1800
PGPSGHKGNR GDSVDQCALI QSIRDKCPCC YGPLECPVFP TELAFALDTS 
      1810       1820       1830       1840       1850
EGVTQDTFSR MREVLLGIVG DLTIAESNCP RGARVAVVTY NNEVTTEIRF 
      1860       1870       1880       1890       1900
ADSKKKSALL DSIQNLQVAL TSKQQSLETA MSFVARNTFK RVRSGFLMRK 
      1910       1920       1930       1940       1950
VAVFFSNKPT RASPQLREAV LKLSDAGITP LFLTSQEDRQ LINALQINNT 
      1960       1970       1980       1990       2000
AVGHALVLPA RRDLTDFLKN VLTCHVCLDI CNIDPSCGFG SWRPSFRDRR 
      2010       2020       2030       2040       2050
AAGSDVDIDL AFILDSSEAT TLFQFNEMKK YIGYVIRQLD LSPDPKASQH 
      2060       2070       2080       2090       2100
FARVAVVQQS TYESVDNASV PPVKVEFSLT DYGAKEKLLD FLSRRMTQLQ 
      2110       2120       2130       2140       2150
GTMGLGNAIE YTIENIFESA PNPRDLKIMV LMLTGDMQRQ QLEEAQRAIL 
      2160       2170       2180       2190       2200
QAKCKGYFFV VLGIGRKVNI KEVYSFASEP NDVFFKFVDK STELNEEPLM 
      2210       2220       2230       2240       2250
RFGRLLPSFV SSENAFYLPP DLRKQCDWFQ GDQPVKNGVK FGHKQINPPH 
      2260       2270       2280       2290       2300
TANSSLTSKV VTTMKPVTTT KPTAIVNLPP AKPAPARPAP AQPVLAKPDP 
      2310       2320       2330       2340       2350
AKPAQARPAP AKPASAKLVP PQPVHVQPAP AQTASVRPAP AKPAPPQPAA 
      2360       2370       2380       2390       2400
AKPVPAKPAV PAQPAPPQPA AAKPVPAKPA VPAQPAPPQP AAAKPVPAKP 
      2410       2420       2430       2440       2450
AVPAQPAAAQ PMPAQPVLTK SAAVKPASAN KPVAAKPVAT NTATATARPA 
      2460       2470       2480       2490       2500
LAAKPAAAKP AATRPLAAAI RPVATKPEAP RQQAKPAATK PATTKPLARV 
      2510       2520       2530       2540       2550
SREVQVSEVT ENSARLHWER PEPSSSFFYD LTVTSAHDQS LVLRQNLTVT 
      2560       2570       2580       2590       2600
DRVIGGLLAG QLYHVVVVSY LQSQVRAIYQ GSFNTKKTQP PPLQAAHRAS 
      2610       2620       2630       2640       2650
SSTINLMVNT EPLFLTKTDI CKLSRDAGTC VDFKLLWHYD LESKSCKRFW 
      2660       2670 
YGGCGGNENR FHSQEECEKM CSPELTV
Length:2,677
Mass (Da):288,695
Last modified:October 3, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF5D7F5DDBDBAAAF3
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
E9PWQ3E9PWQ3_MOUSE
Collagen, type VI, alpha 3
Col6a3
3,284Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A087WS16A0A087WS16_MOUSE
Collagen, type VI, alpha 3
Col6a3
2,677Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
D3YWD1D3YWD1_MOUSE
Collagen, type VI, alpha 3
Col6a3
1,703Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A087WQN9A0A087WQN9_MOUSE
Collagen, type VI, alpha 3
Col6a3
74Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AC110895 Genomic DNA No translation available.
AC158773 Genomic DNA No translation available.
FQ976558 Genomic DNA No translation available.

NCBI Reference Sequences

More...RefSeqi		NP_001229938.1, NM_001243009.1

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSMUST00000097653; ENSMUSP00000137585; ENSMUSG00000048126

Database of genes from NCBI RefSeq genomes

More...GeneIDi		12835

UCSC genome browser

More...UCSCi		uc029qrp.1, mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC110895 Genomic DNA No translation available.
AC158773 Genomic DNA No translation available.
FQ976558 Genomic DNA No translation available.
RefSeqiNP_001229938.1, NM_001243009.1

3D structure databases

SMRiJ3QQ16
ModBaseiSearch...

Proteomic databases

EPDiJ3QQ16
jPOSTiJ3QQ16
MaxQBiJ3QQ16
PaxDbiJ3QQ16
PeptideAtlasiJ3QQ16
PRIDEiJ3QQ16
ProteomicsDBi314779

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...Antibodypediai		1395, 89 antibodies

Genome annotation databases

EnsembliENSMUST00000097653; ENSMUSP00000137585; ENSMUSG00000048126
GeneIDi12835
UCSCiuc029qrp.1, mouse

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		1293
MGIiMGI:88461, Col6a3

Phylogenomic databases

GeneTreeiENSGT00940000156462
HOGENOMiCLU_000182_1_0_1

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...BioGRID-ORCSi		12835, 4 hits in 53 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		Col6a3, mouse

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSMUSG00000048126, Expressed in zone of skin and 258 other tissues

Family and domain databases

CDDicd00063, FN3, 1 hit
cd00109, KU, 1 hit
cd01481, vWA_collagen_alpha3-VI-like, 1 hit
Gene3Di2.60.40.10, 1 hit
3.40.50.410, 9 hits
4.10.410.10, 1 hit
InterProiView protein in InterPro
IPR008160, Collagen
IPR003961, FN3_dom
IPR036116, FN3_sf
IPR013783, Ig-like_fold
IPR002223, Kunitz_BPTI
IPR036880, Kunitz_BPTI_sf
IPR020901, Prtase_inh_Kunz-CS
IPR041900, vWA_collagen_alpha3-VI-like
IPR002035, VWF_A
IPR036465, vWFA_dom_sf
PfamiView protein in Pfam
PF01391, Collagen, 2 hits
PF00014, Kunitz_BPTI, 1 hit
PF00092, VWA, 8 hits
PRINTSiPR00759, BASICPTASE
SMARTiView protein in SMART
SM00131, KU, 1 hit
SM00327, VWA, 9 hits
SUPFAMiSSF49265, SSF49265, 1 hit
SSF53300, SSF53300, 9 hits
SSF57362, SSF57362, 1 hit
PROSITEiView protein in PROSITE
PS00280, BPTI_KUNITZ_1, 1 hit
PS50279, BPTI_KUNITZ_2, 1 hit
PS50853, FN3, 1 hit
PS50234, VWFA, 9 hits

ProtoNet; Automatic hierarchical classification of proteins

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MobiDB: a database of protein disorder and mobility annotations

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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiJ3QQ16_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: J3QQ16
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: April 7, 2021
This is version 71 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Proteomics identificationCombined sources, Reference proteomeImported
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