Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 71 (07 Apr 2021)
Sequence version 1 (03 Oct 2012)
Previous versions | rss
Add a publicationFeedback
Protein
Submitted name:

Collagen, type VI, alpha 3

Gene

Col6a3

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processCell adhesionARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Collagen, type VI, alpha 3Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Col6a3Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:88461, Col6a3

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Extracellular matrixARBA annotation, Secreted

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 25Sequence analysisAdd BLAST25
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500377732526 – 2677Sequence analysisAdd BLAST2652

Keywords - PTMi

Disulfide bondARBA annotation

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
J3QQ16

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
J3QQ16

MaxQB - The MaxQuant DataBase

More...
MaxQBi
J3QQ16

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
J3QQ16

PeptideAtlas

More...
PeptideAtlasi
J3QQ16

PRoteomics IDEntifications database

More...
PRIDEi
J3QQ16

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
314779

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000048126, Expressed in zone of skin and 258 other tissues

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
J3QQ16

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini37 – 212VWFAInterPro annotationAdd BLAST176
Domaini229 – 401VWFAInterPro annotationAdd BLAST173
Domaini419 – 595VWFAInterPro annotationAdd BLAST177
Domaini623 – 794VWFAInterPro annotationAdd BLAST172
Domaini826 – 999VWFAInterPro annotationAdd BLAST174
Domaini1029 – 1206VWFAInterPro annotationAdd BLAST178
Domaini1228 – 1414VWFAInterPro annotationAdd BLAST187
Domaini1792 – 1971VWFAInterPro annotationAdd BLAST180
Domaini2009 – 2205VWFAInterPro annotationAdd BLAST197
Domaini2500 – 2591Fibronectin type-IIIInterPro annotationAdd BLAST92
Domaini2621 – 2671BPTI/Kunitz inhibitorInterPro annotationAdd BLAST51

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1003 – 1023DisorderedSequence analysisAdd BLAST21
Regioni1432 – 1759DisorderedSequence analysisAdd BLAST328
Regioni2271 – 2440DisorderedSequence analysisAdd BLAST170
Regioni2474 – 2517DisorderedSequence analysisAdd BLAST44

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1498 – 1514PolyampholyteSequence analysisAdd BLAST17
Compositional biasi1522 – 1559PolyampholyteSequence analysisAdd BLAST38
Compositional biasi1681 – 1703PolyampholyteSequence analysisAdd BLAST23
Compositional biasi2278 – 2307Pro-richSequence analysisAdd BLAST30
Compositional biasi2339 – 2410Pro-richSequence analysisAdd BLAST72

Keywords - Domaini

CollagenARBA annotation, SignalSequence analysis

Phylogenomic databases

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000156462

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_000182_1_0_1

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00063, FN3, 1 hit
cd00109, KU, 1 hit
cd01481, vWA_collagen_alpha3-VI-like, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.40.10, 1 hit
3.40.50.410, 9 hits
4.10.410.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008160, Collagen
IPR003961, FN3_dom
IPR036116, FN3_sf
IPR013783, Ig-like_fold
IPR002223, Kunitz_BPTI
IPR036880, Kunitz_BPTI_sf
IPR020901, Prtase_inh_Kunz-CS
IPR041900, vWA_collagen_alpha3-VI-like
IPR002035, VWF_A
IPR036465, vWFA_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01391, Collagen, 2 hits
PF00014, Kunitz_BPTI, 1 hit
PF00092, VWA, 8 hits

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00759, BASICPTASE

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00131, KU, 1 hit
SM00327, VWA, 9 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49265, SSF49265, 1 hit
SSF53300, SSF53300, 9 hits
SSF57362, SSF57362, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00280, BPTI_KUNITZ_1, 1 hit
PS50279, BPTI_KUNITZ_2, 1 hit
PS50853, FN3, 1 hit
PS50234, VWFA, 9 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.Show allAlign All

J3QQ16-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRKHRHLPLV AVFSLLLSGI ATTHAQQHGV MEVNKRDIVF LVDGSSSLGP
60 70 80 90 100
SNFNAIRDFV TRVIQRLEIG QDLVQVSVAQ YADTVKPEFY LNSYTNKRDA
110 120 130 140 150
ITAVRKMRAL NGSALYTGSS LDFVRNNLFT SSAGHRAAEG VPKLLVLITG
160 170 180 190 200
GKSLDEVSQP AQELKRGSIM ALAVGSKAAD EDELKEIAFD SSLVFIPAEF
210 220 230 240 250
RPAPLQNMLP SLMAPLRTLT GTTEESKRDI LFLFDGSVNV LGQFPAVRDF
260 270 280 290 300
LYRIIEELDV KPDGTRVAIA QFSDDVRLES RFSEHQTKAE ILNLVKKMKL
310 320 330 340 350
KTGKALNLGY ALDYALRNIF VRSAGSRIED NVQQFLVLLV AGRSSDAVAG
360 370 380 390 400
PASSLKQRGV VPFIFQAKNA NPSELEQIVL SPAFILAAES LPKIGDLQSQ
410 420 430 440 450
IVSLLKAEQG SGPVSGEKDV VFLIDGSEGV RSGFPLLKDF VQRVVESLDV
460 470 480 490 500
GPDRVRVALV QYSDRTRPEF YLNSHMDQQG VISAIRRLTL LGGPTPNTGA
510 520 530 540 550
ALEFVLRNIL TSSTGSRIAE GVPQLLIVLT AEPSGDDVRG PSVVLKQGGA
560 570 580 590 600
VPIGIGIGNA DISEMQTISF IPDFAVAIPT FRELGTIQQV ISERVIQLNR
610 620 630 640 650
EELSSLKPIL TPSTGAGVGS KKDVVFLIDG SRNAGPEFQY IRTLIERIVE
660 670 680 690 700
YLDIGFDTTR VAVIQFSEDS KMEFPLNAHF SKDEVQNAVR RLRPKGGSQV
710 720 730 740 750
YIGNALEYVL KNIFQRPLGS RIEEGVPQFL VLISSGKSDD EVDDSAVELK
760 770 780 790 800
QFGVAPLTIA RHTDQEELVK ISLSPEYVYS VSTFRELPRL EQKLLTPITT
810 820 830 840 850
LTSQQIHQIL ASTRYPPSVV ESDAADIVFL IDSSDAVKPD GIAHIRDFVS
860 870 880 890 900
RIVRRLNIGP SKVRIGVVQF SNDVFPEFYL KTHKSQSSVL EAIRRLRFKG
910 920 930 940 950
GSPLNTGRAL EFVARNLFVK SAGSRIEDGV PQHLVLFLGG KSQDDVARHA
960 970 980 990 1000
QVISSSGIVS LGIGDRNIDR TDLQTITNDP RLVFTVREFR ELPNIEERVM
1010 1020 1030 1040 1050
LSFGPSGATP QPPGVDLPSP SRPEKKKADI VFLLDGSINF RRDSFQEVLR
1060 1070 1080 1090 1100
FASEIVDTVY EDGDSIRVGL VQYNSDPTDE FFLRDFSTKR QIIDAINKVV
1110 1120 1130 1140 1150
YKGGRHANTR VGIEHLLRNH FVPEAGSRLD ERVPQIAFVI TGGKSVEDAQ
1160 1170 1180 1190 1200
DVSLALTQKG VKVFAVGVRN IDSEEVGKIA SNSATAFRVG SVQELSELSE
1210 1220 1230 1240 1250
TVLETLHDAM HETLCPGVTD VSKACNLEVI LGFDGSRDQN VFVSQKGLES
1260 1270 1280 1290 1300
KVDIILNRIS QIQRISCSGN QLPTVRVSVM ANTPSGPVEA FDFAEYQPEL
1310 1320 1330 1340 1350
FEKFRNMRSQ RPYVLTADTL KLYQNKFRQS SPDTVKVVIH FTDGADGDMA
1360 1370 1380 1390 1400
DLYRASEELR QAGAQALILV GLERVANLER LMHLEFGRGF MYDRPLRLNL
1410 1420 1430 1440 1450
LDLDYELAEQ LDNIAEKACC GVPCKCSGER GDRGPIGSIG PKGISGEDGY
1460 1470 1480 1490 1500
RGYPGDEGGP GERGPPGVNG TQGFQGCPGQ RGVKGSRGFP GEKGELGEIG
1510 1520 1530 1540 1550
LDGLDGEEGD KGLPGSSGEK GSPGRRGDKG PKGDKGERGD VGIRGDPGDS
1560 1570 1580 1590 1600
GRDSQQRGPK GETGDIGPMG LPGRDGIPGS PGDPGKDGGS GRRGPAGAKG
1610 1620 1630 1640 1650
NRGGPGQPGF EGEQGTRGSQ GPPGPIGPPG LIGEQGIPGP RGGGGTAGAP
1660 1670 1680 1690 1700
GERGRTGPLG RKGEPGEPGP KGSIGNRGPR GETGDDGRDG VGSEGRRGKK
1710 1720 1730 1740 1750
GERGFPGYPG PKGTPGEPGA DGPPGPKGIR GRRGNSGPPG ATGQKGDPGY
1760 1770 1780 1790 1800
PGPSGHKGNR GDSVDQCALI QSIRDKCPCC YGPLECPVFP TELAFALDTS
1810 1820 1830 1840 1850
EGVTQDTFSR MREVLLGIVG DLTIAESNCP RGARVAVVTY NNEVTTEIRF
1860 1870 1880 1890 1900
ADSKKKSALL DSIQNLQVAL TSKQQSLETA MSFVARNTFK RVRSGFLMRK
1910 1920 1930 1940 1950
VAVFFSNKPT RASPQLREAV LKLSDAGITP LFLTSQEDRQ LINALQINNT
1960 1970 1980 1990 2000
AVGHALVLPA RRDLTDFLKN VLTCHVCLDI CNIDPSCGFG SWRPSFRDRR
2010 2020 2030 2040 2050
AAGSDVDIDL AFILDSSEAT TLFQFNEMKK YIGYVIRQLD LSPDPKASQH
2060 2070 2080 2090 2100
FARVAVVQQS TYESVDNASV PPVKVEFSLT DYGAKEKLLD FLSRRMTQLQ
2110 2120 2130 2140 2150
GTMGLGNAIE YTIENIFESA PNPRDLKIMV LMLTGDMQRQ QLEEAQRAIL
2160 2170 2180 2190 2200
QAKCKGYFFV VLGIGRKVNI KEVYSFASEP NDVFFKFVDK STELNEEPLM
2210 2220 2230 2240 2250
RFGRLLPSFV SSENAFYLPP DLRKQCDWFQ GDQPVKNGVK FGHKQINPPH
2260 2270 2280 2290 2300
TANSSLTSKV VTTMKPVTTT KPTAIVNLPP AKPAPARPAP AQPVLAKPDP
2310 2320 2330 2340 2350
AKPAQARPAP AKPASAKLVP PQPVHVQPAP AQTASVRPAP AKPAPPQPAA
2360 2370 2380 2390 2400
AKPVPAKPAV PAQPAPPQPA AAKPVPAKPA VPAQPAPPQP AAAKPVPAKP
2410 2420 2430 2440 2450
AVPAQPAAAQ PMPAQPVLTK SAAVKPASAN KPVAAKPVAT NTATATARPA
2460 2470 2480 2490 2500
LAAKPAAAKP AATRPLAAAI RPVATKPEAP RQQAKPAATK PATTKPLARV
2510 2520 2530 2540 2550
SREVQVSEVT ENSARLHWER PEPSSSFFYD LTVTSAHDQS LVLRQNLTVT
2560 2570 2580 2590 2600
DRVIGGLLAG QLYHVVVVSY LQSQVRAIYQ GSFNTKKTQP PPLQAAHRAS
2610 2620 2630 2640 2650
SSTINLMVNT EPLFLTKTDI CKLSRDAGTC VDFKLLWHYD LESKSCKRFW
2660 2670
YGGCGGNENR FHSQEECEKM CSPELTV
Length:2,677
Mass (Da):288,695
Last modified:October 3, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF5D7F5DDBDBAAAF3
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
E9PWQ3E9PWQ3_MOUSE
Collagen, type VI, alpha 3
Col6a3
3,284Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A087WS16A0A087WS16_MOUSE
Collagen, type VI, alpha 3
Col6a3
2,677Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
D3YWD1D3YWD1_MOUSE
Collagen, type VI, alpha 3
Col6a3
1,703Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A087WQN9A0A087WQN9_MOUSE
Collagen, type VI, alpha 3
Col6a3
74Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC110895 Genomic DNA No translation available.
AC158773 Genomic DNA No translation available.
FQ976558 Genomic DNA No translation available.

NCBI Reference Sequences

More...
RefSeqi
NP_001229938.1, NM_001243009.1

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000097653; ENSMUSP00000137585; ENSMUSG00000048126

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
12835

UCSC genome browser

More...
UCSCi
uc029qrp.1, mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC110895 Genomic DNA No translation available.
AC158773 Genomic DNA No translation available.
FQ976558 Genomic DNA No translation available.
RefSeqiNP_001229938.1, NM_001243009.1

3D structure databases

SMRiJ3QQ16
ModBaseiSearch...

Proteomic databases

EPDiJ3QQ16
jPOSTiJ3QQ16
MaxQBiJ3QQ16
PaxDbiJ3QQ16
PeptideAtlasiJ3QQ16
PRIDEiJ3QQ16
ProteomicsDBi314779

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...
Antibodypediai
1395, 89 antibodies

Genome annotation databases

EnsembliENSMUST00000097653; ENSMUSP00000137585; ENSMUSG00000048126
GeneIDi12835
UCSCiuc029qrp.1, mouse

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
1293
MGIiMGI:88461, Col6a3

Phylogenomic databases

GeneTreeiENSGT00940000156462
HOGENOMiCLU_000182_1_0_1

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...
BioGRID-ORCSi
12835, 4 hits in 53 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
Col6a3, mouse

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000048126, Expressed in zone of skin and 258 other tissues

Family and domain databases

CDDicd00063, FN3, 1 hit
cd00109, KU, 1 hit
cd01481, vWA_collagen_alpha3-VI-like, 1 hit
Gene3Di2.60.40.10, 1 hit
3.40.50.410, 9 hits
4.10.410.10, 1 hit
InterProiView protein in InterPro
IPR008160, Collagen
IPR003961, FN3_dom
IPR036116, FN3_sf
IPR013783, Ig-like_fold
IPR002223, Kunitz_BPTI
IPR036880, Kunitz_BPTI_sf
IPR020901, Prtase_inh_Kunz-CS
IPR041900, vWA_collagen_alpha3-VI-like
IPR002035, VWF_A
IPR036465, vWFA_dom_sf
PfamiView protein in Pfam
PF01391, Collagen, 2 hits
PF00014, Kunitz_BPTI, 1 hit
PF00092, VWA, 8 hits
PRINTSiPR00759, BASICPTASE
SMARTiView protein in SMART
SM00131, KU, 1 hit
SM00327, VWA, 9 hits
SUPFAMiSSF49265, SSF49265, 1 hit
SSF53300, SSF53300, 9 hits
SSF57362, SSF57362, 1 hit
PROSITEiView protein in PROSITE
PS00280, BPTI_KUNITZ_1, 1 hit
PS50279, BPTI_KUNITZ_2, 1 hit
PS50853, FN3, 1 hit
PS50234, VWFA, 9 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiJ3QQ16_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: J3QQ16
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: April 7, 2021
This is version 71 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again