UniProtKB - J3KNW3 (J3KNW3_HUMAN)
Protein
RNA binding protein fox-1 homolog 1
Gene
RBFOX1
Organism
Homo sapiens (Human)
Status
Functioni
RNA-binding protein that regulates alternative splicing events.UniRule annotation
GO - Molecular functioni
- RNA binding Source: UniProtKB-UniRule
GO - Biological processi
- mRNA processing Source: UniProtKB-KW
- regulation of RNA splicing Source: InterPro
- RNA splicing Source: UniProtKB-KW
Keywordsi
Molecular function | RNA-bindingUniRule annotation |
Biological process | mRNA processing, mRNA splicingUniRule annotation |
Names & Taxonomyi
Protein namesi | Recommended name: RNA binding protein fox-1 homolog 1UniRule annotation |
Gene namesi | Name:RBFOX1Imported |
Organismi | Homo sapiens (Human)Imported |
Taxonomic identifieri | 9606 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Proteomesi |
|
Organism-specific databases
HGNCi | HGNC:18222 RBFOX1 |
Subcellular locationi
Keywords - Cellular componenti
NucleusUniRule annotationExpressioni
Gene expression databases
Bgeei | ENSG00000078328 Expressed in 177 organ(s), highest expression level in putamen |
ExpressionAtlasi | J3KNW3 baseline and differential |
Interactioni
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sitei | 123 | Interaction with RNAUniRule annotation | 1 | |
Sitei | 131 | Interaction with RNAUniRule annotation | 1 | |
Sitei | 132 | Interaction with RNAUniRule annotation | 1 | |
Sitei | 156 | Interaction with RNAUniRule annotation | 1 | |
Sitei | 161 | Interaction with RNAUniRule annotation | 1 | |
Sitei | 165 | Interaction with RNAUniRule annotation | 1 | |
Sitei | 189 | Interaction with RNAUniRule annotation | 1 | |
Sitei | 199 | Interaction with RNAUniRule annotation | 1 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 122 – 198 | RRMInterPro annotationAdd BLAST | 77 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 19 – 127 | DisorderedSequence analysisAdd BLAST | 109 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 60 – 124 | PolarSequence analysisAdd BLAST | 65 |
Phylogenomic databases
eggNOGi | KOG0125 Eukaryota ENOG4111WJT LUCA |
GeneTreei | ENSGT00940000160685 |
Family and domain databases
CDDi | cd12407 RRM_FOX1_like, 1 hit |
Gene3Di | 3.30.70.330, 1 hit |
InterProi | View protein in InterPro IPR025670 Fox-1_C_dom IPR034237 FOX1_RRM IPR012677 Nucleotide-bd_a/b_plait_sf IPR035979 RBD_domain_sf IPR017325 RNA-bd_Fox-1 IPR000504 RRM_dom |
Pfami | View protein in Pfam PF12414 Fox-1_C, 1 hit PF00076 RRM_1, 1 hit |
PIRSFi | PIRSF037932 Ataxin_2_bd_A2BP, 1 hit |
SMARTi | View protein in SMART SM00360 RRM, 1 hit |
SUPFAMi | SSF54928 SSF54928, 1 hit |
PROSITEi | View protein in PROSITE PS50102 RRM, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 12 potential isoforms that are computationally mapped.Show allAlign All
J3KNW3-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MIVPAAPYLP GLIQGNQEAA AAPDTMAQPY ASAQFAPPQN GIPAEYTAPH
60 70 80 90 100
PHPAPEYTGQ TTVPEHTLNL YPPAQTHSEQ SPADTSAQTV SGTATQTDDA
110 120 130 140 150
APTDGQPQTQ PSENTENKSQ PKRLHVSNIP FRFRDPDLRQ MFGQFGKILD
160 170 180 190 200
VEIIFNERGS KGFGFVTFEN SADADRAREK LHGTVVEGRK IEVNNATARV
210 220 230 240 250
MTNKKTVNPY TNGWKLNPVV GAVYSPEFYA GTVLLCQANQ EGSSMYSAPS
260 270 280 290 300
SLVYTSAMPG FPYPAATAAA AYRGAHLRGR GRTVYNTFRA AAPPPPIPAY
310 320 330 340 350
GGVVYQDGFY GADIYGGYAA YRYAQPTPAT AAAYSDSYGR VYAADPYHHA
360 370 380 390 400
LAPAPTYGVG AMNAFAPLTD AKTRSHADDV GLVLSSLQAS IYRGGYNRFA
PY
Computationally mapped potential isoform sequencesi
There are 12 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketQ9NWB1 | RFOX1_HUMAN | RNA binding protein fox-1 homolog 1 | RBFOX1 A2BP, A2BP1, FOX1, HRNBP1 | 397 | Annotation score: | ||
B7Z1U7 | B7Z1U7_HUMAN | RNA binding protein fox-1 homolog 1 | RBFOX1 | 425 | Annotation score: | ||
A0A087X2B1 | A0A087X2B1_HUMAN | RNA binding protein fox-1 homolog 1 | RBFOX1 | 375 | Annotation score: | ||
F8VRS4 | F8VRS4_HUMAN | RNA binding protein fox-1 homolog 1 | RBFOX1 | 391 | Annotation score: | ||
F5H0M1 | F5H0M1_HUMAN | RNA binding protein fox-1 homolog 1 | RBFOX1 | 380 | Annotation score: | ||
F8VZG9 | F8VZG9_HUMAN | RNA-binding protein fox-1 homolog 1 | RBFOX1 | 466 | Annotation score: | ||
I3L1D4 | I3L1D4_HUMAN | RNA-binding protein fox-1 homolog 1 | RBFOX1 | 189 | Annotation score: | ||
F8VR27 | F8VR27_HUMAN | RNA-binding protein fox-1 homolog 1 | RBFOX1 | 262 | Annotation score: | ||
F8VZY7 | F8VZY7_HUMAN | RNA-binding protein fox-1 homolog 1 | RBFOX1 | 263 | Annotation score: | ||
A0A286YEU2 | A0A286YEU2_HUMAN | RNA-binding protein fox-1 homolog 1 | RBFOX1 | 582 | Annotation score: | ||
There are more potential isoformsShow all |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC005347 Genomic DNA No translation available. AC005364 Genomic DNA No translation available. AC005563 Genomic DNA No translation available. AC005569 Genomic DNA No translation available. AC005737 Genomic DNA No translation available. AC012175 Genomic DNA No translation available. AC023822 Genomic DNA No translation available. AC074051 Genomic DNA No translation available. KF495794 Genomic DNA No translation available. |
Genome annotation databases
Ensembli | ENST00000340209; ENSP00000344196; ENSG00000078328 |
UCSCi | uc059qmz.1 human |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC005347 Genomic DNA No translation available. AC005364 Genomic DNA No translation available. AC005563 Genomic DNA No translation available. AC005569 Genomic DNA No translation available. AC005737 Genomic DNA No translation available. AC012175 Genomic DNA No translation available. AC023822 Genomic DNA No translation available. AC074051 Genomic DNA No translation available. KF495794 Genomic DNA No translation available. |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Proteomic databases
jPOSTi | J3KNW3 |
MaxQBi | J3KNW3 |
PRIDEi | J3KNW3 |
Genome annotation databases
Ensembli | ENST00000340209; ENSP00000344196; ENSG00000078328 |
UCSCi | uc059qmz.1 human |
Organism-specific databases
HGNCi | HGNC:18222 RBFOX1 |
OpenTargetsi | ENSG00000078328 |
GenAtlasi | Search... |
Phylogenomic databases
eggNOGi | KOG0125 Eukaryota ENOG4111WJT LUCA |
GeneTreei | ENSGT00940000160685 |
Miscellaneous databases
ChiTaRSi | RBFOX1 human |
Gene expression databases
Bgeei | ENSG00000078328 Expressed in 177 organ(s), highest expression level in putamen |
ExpressionAtlasi | J3KNW3 baseline and differential |
Family and domain databases
CDDi | cd12407 RRM_FOX1_like, 1 hit |
Gene3Di | 3.30.70.330, 1 hit |
InterProi | View protein in InterPro IPR025670 Fox-1_C_dom IPR034237 FOX1_RRM IPR012677 Nucleotide-bd_a/b_plait_sf IPR035979 RBD_domain_sf IPR017325 RNA-bd_Fox-1 IPR000504 RRM_dom |
Pfami | View protein in Pfam PF12414 Fox-1_C, 1 hit PF00076 RRM_1, 1 hit |
PIRSFi | PIRSF037932 Ataxin_2_bd_A2BP, 1 hit |
SMARTi | View protein in SMART SM00360 RRM, 1 hit |
SUPFAMi | SSF54928 SSF54928, 1 hit |
PROSITEi | View protein in PROSITE PS50102 RRM, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | J3KNW3_HUMAN | |
Accessioni | J3KNW3Primary (citable) accession number: J3KNW3 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | October 3, 2012 |
Last sequence update: | October 3, 2012 | |
Last modified: | November 13, 2019 | |
This is version 47 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) | |
Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. |