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Protein
Submitted name:

Uncharacterized protein

Gene

ZSCAN18

Organism
Ictidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Biological processTranscription, Transcription regulationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:ZSCAN18Imported
OrganismiIctidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)Imported
Taxonomic identifieri43179 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciuromorphaSciuridaeXerinaeMarmotiniIctidomys
Proteomesi
  • UP000005215 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000023779

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini57 – 135SCAN boxInterPro annotationAdd BLAST79
Domaini451 – 478C2H2-typeInterPro annotationAdd BLAST28

Keywords - Domaini

RepeatSAAS annotation, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00910000144000
InParanoidiI3NHD2
OrthoDBiEOG091G09O9
TreeFamiTF336839

Family and domain databases

CDDicd07936 SCAN, 1 hit
Gene3Di1.10.4020.10, 1 hit
InterProiView protein in InterPro
IPR003309 SCAN_dom
IPR038269 SCAN_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF02023 SCAN, 1 hit
SMARTiView protein in SMART
SM00431 SCAN, 1 hit
SM00355 ZnF_C2H2, 1 hit
SUPFAMiSSF57667 SSF57667, 1 hit
PROSITEiView protein in PROSITE
PS50804 SCAN_BOX, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 1 hit
PS50157 ZINC_FINGER_C2H2_2, 1 hit

Sequencei

Sequence statusi: Complete.

I3NHD2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLPLEKVLAS PRSSPTPPEV HTEGSADTEG SADTSQQEDP ESETIPERTP
60 70 80 90 100
ADLEFSRLRF REFVYQEAAG PHQTLARLHE LCRQWLRPEA CSKEQILEML
110 120 130 140 150
VLEQFLGILP DRVRPWVVAQ YPESCKKAAS LVEGLTDVLE EPGMLLCSPA
160 170 180 190 200
GSSSGLSEGV YERHPDPLLL PGGLGSPRDP EDIPLPPDAP LPCLLPAWPA
210 220 230 240 250
LEPMLLDQGS NGGEKTDEAK VQPTPSFPEE HLHSEEWAHL DPAEENMKSY
260 270 280 290 300
RKLLLWGYQF AQPDAASSLV AEEQPLVEGE APGGSFPGSG KQEESSENMC
310 320 330 340 350
EEGSAGQDSG SQETPSERLA GDAGDTPADP PMDTNQEEEQ PEKAPDTVGE
360 370 380 390 400
DSGCASPSQK PRDPCPSEED QGQASPDSPQ QGSGTKRPHP EDEGEQGPEC
410 420 430 440 450
ASSHSSHQPG DAMEPEADGR AATPPAGQDA GTSASGGPEA EEPGVSGGKP
460 470 480
YPCSECGEAF AWISHLMEHH RSHGSKKLCA CQGC
Length:484
Mass (Da):51,674
Last modified:November 22, 2017 - v2
Checksum:i1335AE4CB35ED75A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01115904 Genomic DNA No translation available.
AGTP01115905 Genomic DNA No translation available.
AGTP01115906 Genomic DNA No translation available.
RefSeqiXP_005341806.1, XM_005341749.2
XP_013221365.1, XM_013365911.1

Genome annotation databases

EnsembliENSSTOT00000025206; ENSSTOP00000023779; ENSSTOG00000027115
GeneIDi101954710

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01115904 Genomic DNA No translation available.
AGTP01115905 Genomic DNA No translation available.
AGTP01115906 Genomic DNA No translation available.
RefSeqiXP_005341806.1, XM_005341749.2
XP_013221365.1, XM_013365911.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000023779

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSSTOT00000025206; ENSSTOP00000023779; ENSSTOG00000027115
GeneIDi101954710

Organism-specific databases

CTDi65982

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00910000144000
InParanoidiI3NHD2
OrthoDBiEOG091G09O9
TreeFamiTF336839

Family and domain databases

CDDicd07936 SCAN, 1 hit
Gene3Di1.10.4020.10, 1 hit
InterProiView protein in InterPro
IPR003309 SCAN_dom
IPR038269 SCAN_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF02023 SCAN, 1 hit
SMARTiView protein in SMART
SM00431 SCAN, 1 hit
SM00355 ZnF_C2H2, 1 hit
SUPFAMiSSF57667 SSF57667, 1 hit
PROSITEiView protein in PROSITE
PS50804 SCAN_BOX, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 1 hit
PS50157 ZINC_FINGER_C2H2_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiI3NHD2_ICTTR
AccessioniPrimary (citable) accession number: I3NHD2
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: November 22, 2017
Last modified: November 7, 2018
This is version 46 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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