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Protein
Submitted name:

Uncharacterized protein

Gene

SNRNP35

Organism
Ictidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:SNRNP35Imported
OrganismiIctidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)Imported
Taxonomic identifieri43179 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciuromorphaSciuridaeXerinaeMarmotiniIctidomys
Proteomesi
  • UP000005215 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000023566

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini51 – 129RRMInterPro annotationAdd BLAST79

Phylogenomic databases

eggNOGiKOG0113 Eukaryota
COG0724 LUCA
GeneTreeiENSGT00530000063750
InParanoidiI3NGR9
OMAiPENDWER
OrthoDBiEOG091G0NV3
TreeFamiTF331614

Family and domain databases

CDDicd12237 RRM_snRNP35, 1 hit
Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR034146 snRNP35_RRM
PfamiView protein in Pfam
PF00076 RRM_1, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit

Sequencei

Sequence statusi: Complete.

I3NGR9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNDWMPIAKE YDPLKAGSID GTDEDPHDRA VWRAMLARYV PNKGVTGDPL
60 70 80 90 100
LTLFVARLNL QTKEDKLREV FSRYGDIRRL RLVRDLVTGF SKGYAFIEFR
110 120 130 140 150
EERALLKAYR DADGLLVDQR ELFVDYELER TLRGWVPRRL GGGLGGKKES
160 170 180 190 200
GQLRFGGRDR PFRKPINLPV VKGDLYREGK RDRRERSRSR ERHWESRARD
210 220 230 240
RDHDRGREKR WPEREPARAW PENDWERDPR EDRPRGREKR DRSK
Length:244
Mass (Da):29,098
Last modified:July 11, 2012 - v1
Checksum:i664F9C44ECAA147B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01058446 Genomic DNA No translation available.
RefSeqiXP_005329614.1, XM_005329557.2

Genome annotation databases

EnsembliENSSTOT00000028866; ENSSTOP00000023566; ENSSTOG00000025145
GeneIDi101974103

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01058446 Genomic DNA No translation available.
RefSeqiXP_005329614.1, XM_005329557.2

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000023566

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSSTOT00000028866; ENSSTOP00000023566; ENSSTOG00000025145
GeneIDi101974103

Organism-specific databases

CTDi11066

Phylogenomic databases

eggNOGiKOG0113 Eukaryota
COG0724 LUCA
GeneTreeiENSGT00530000063750
InParanoidiI3NGR9
OMAiPENDWER
OrthoDBiEOG091G0NV3
TreeFamiTF331614

Family and domain databases

CDDicd12237 RRM_snRNP35, 1 hit
Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR034146 snRNP35_RRM
PfamiView protein in Pfam
PF00076 RRM_1, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiI3NGR9_ICTTR
AccessioniPrimary (citable) accession number: I3NGR9
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: October 10, 2018
This is version 32 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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