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Protein
Submitted name:

Uncharacterized protein

Gene

RFXANK

Organism
Ictidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:RFXANKImported
OrganismiIctidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)Imported
Taxonomic identifieri43179 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciuromorphaSciuridaeXerinaeMarmotiniIctidomys
Proteomesi
  • UP000005215 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000015423

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini85 – 238ANK_REP_REGIONInterPro annotationAdd BLAST154
Repeati119 – 151ANKPROSITE-ProRule annotationAdd BLAST33
Repeati152 – 184ANKPROSITE-ProRule annotationAdd BLAST33
Repeati185 – 217ANKPROSITE-ProRule annotationAdd BLAST33

Keywords - Domaini

ANK repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0502 Eukaryota
COG0666 LUCA
GeneTreeiENSGT00930000150856
InParanoidiI3MTH8
OrthoDBiEOG091G0BD5
TreeFamiTF333112

Family and domain databases

CDDicd00204 ANK, 1 hit
Gene3Di1.25.40.20, 1 hit
InterProiView protein in InterPro
IPR002110 Ankyrin_rpt
IPR020683 Ankyrin_rpt-contain_dom
IPR036770 Ankyrin_rpt-contain_sf
IPR017362 DNA-bd_RFXANK
PfamiView protein in Pfam
PF12796 Ank_2, 1 hit
PF13606 Ank_3, 1 hit
PIRSFiPIRSF038034 DNA-binding_RFXANK, 1 hit
SMARTiView protein in SMART
SM00248 ANK, 4 hits
SUPFAMiSSF48403 SSF48403, 1 hit
PROSITEiView protein in PROSITE
PS50297 ANK_REP_REGION, 1 hit
PS50088 ANK_REPEAT, 3 hits

Sequencei

Sequence statusi: Complete.

I3MTH8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDPTQPAEDL ILTQQSPTPE LGDPEDHGIE TPDGSDTVVL SLFPCTPEPE
60 70 80 90 100
ADASVCSLQG SSLKHSTTLT NRQRGNEVSA LPATLDSLSI HQLAAQGELS
110 120 130 140 150
QLKEHLRKGD NLINKPDERG FTPLIWASAF GEIETVRFLL EWGADPHILA
160 170 180 190 200
KERESALSLA SMGGYTDIVG LLLERDVDIN IYDWNGGTPL LYAVRGNHVK
210 220 230 240 250
CVEALLARGA DLTTEADSGY TPMDLAVALG YRKVQQVIEN HILKLFHSNL

GPTDPE
Length:256
Mass (Da):27,801
Last modified:November 22, 2017 - v2
Checksum:i0AF6D57D83BB46C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01071244 Genomic DNA No translation available.
RefSeqiXP_005333016.1, XM_005332959.2
XP_013217321.1, XM_013361867.1

Genome annotation databases

EnsembliENSSTOT00000027010; ENSSTOP00000015423; ENSSTOG00000024080
GeneIDi101977857

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01071244 Genomic DNA No translation available.
RefSeqiXP_005333016.1, XM_005332959.2
XP_013217321.1, XM_013361867.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000015423

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSSTOT00000027010; ENSSTOP00000015423; ENSSTOG00000024080
GeneIDi101977857

Organism-specific databases

CTDi8625

Phylogenomic databases

eggNOGiKOG0502 Eukaryota
COG0666 LUCA
GeneTreeiENSGT00930000150856
InParanoidiI3MTH8
OrthoDBiEOG091G0BD5
TreeFamiTF333112

Family and domain databases

CDDicd00204 ANK, 1 hit
Gene3Di1.25.40.20, 1 hit
InterProiView protein in InterPro
IPR002110 Ankyrin_rpt
IPR020683 Ankyrin_rpt-contain_dom
IPR036770 Ankyrin_rpt-contain_sf
IPR017362 DNA-bd_RFXANK
PfamiView protein in Pfam
PF12796 Ank_2, 1 hit
PF13606 Ank_3, 1 hit
PIRSFiPIRSF038034 DNA-binding_RFXANK, 1 hit
SMARTiView protein in SMART
SM00248 ANK, 4 hits
SUPFAMiSSF48403 SSF48403, 1 hit
PROSITEiView protein in PROSITE
PS50297 ANK_REP_REGION, 1 hit
PS50088 ANK_REPEAT, 3 hits
ProtoNetiSearch...

Entry informationi

Entry nameiI3MTH8_ICTTR
AccessioniPrimary (citable) accession number: I3MTH8
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: November 22, 2017
Last modified: November 7, 2018
This is version 42 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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