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Protein
Submitted name:

Uncharacterized protein

Gene

SNRNP40

Organism
Ictidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)
Status
Unreviewed-Annotation score: -Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:SNRNP40Imported
OrganismiIctidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)Imported
Taxonomic identifieri43179 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciuromorphaSciuridaeXerinaeMarmotiniIctidomys
Proteomesi
  • UP000005215 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000003409

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini63 – 358WD_REPEATS_REGIONInterPro annotationAdd BLAST296
Repeati63 – 96WDPROSITE-ProRule annotationAdd BLAST34
Repeati106 – 147WDPROSITE-ProRule annotationAdd BLAST42
Repeati148 – 190WDPROSITE-ProRule annotationAdd BLAST43
Repeati190 – 231WDPROSITE-ProRule annotationAdd BLAST42
Repeati232 – 266WDPROSITE-ProRule annotationAdd BLAST35
Repeati293 – 323WDPROSITE-ProRule annotationAdd BLAST31
Repeati324 – 358WDPROSITE-ProRule annotationAdd BLAST35

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0265 Eukaryota
ENOG410XSEW LUCA
GeneTreeiENSGT00810000125363
InParanoidiI3M309
OrthoDBiEOG091G0DR4
TreeFamiTF300039

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR020472 G-protein_beta_WD-40_rep
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 7 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 7 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 5 hits
PS50082 WD_REPEATS_2, 7 hits
PS50294 WD_REPEATS_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

I3M309-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIEQQKRKGP ELPLVPVKRQ RHELLLGAAG SGPGAGQQQG TPGALLQAGP
60 70 80 90 100
PRCSSLQAPI MLLSGHEGEV YCCKFHPNGS TLASAGFDRL ILLWNVYGDC
110 120 130 140 150
DNYATLKGHS GAVMELHYNT DGSMLFSAST DKTVAVWDSE TGERVKRLKG
160 170 180 190 200
HTSFVNSCYP ARRGPQLVCT GSDDGTVKLW DIRKKAAIQT FQNTYQVLAV
210 220 230 240 250
TFNDTSDQII SGGIDNDIKV WDLRQNKLTY TMRGHADSVT GLSLSSEGSY
260 270 280 290 300
LLSNAMDNTV RVWDVRPFAP KERCVKIFQG NVHNFEKNLL RCSWSPDGSK
310 320 330 340 350
IAAGSADRFV YVWDTTSRRI LYKLPGHAGS INEVAFHPDE PIILSASSDK

RLYMGEIQ
Length:358
Mass (Da):39,368
Last modified:November 22, 2017 - v2
Checksum:iF8AC48FD5E92B2C1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01008040 Genomic DNA No translation available.
AGTP01008041 Genomic DNA No translation available.
AGTP01008042 Genomic DNA No translation available.
RefSeqiXP_005317780.1, XM_005317723.2

Genome annotation databases

EnsembliENSSTOT00000003804; ENSSTOP00000003409; ENSSTOG00000003798
GeneIDi101976496

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01008040 Genomic DNA No translation available.
AGTP01008041 Genomic DNA No translation available.
AGTP01008042 Genomic DNA No translation available.
RefSeqiXP_005317780.1, XM_005317723.2

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000003409

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSSTOT00000003804; ENSSTOP00000003409; ENSSTOG00000003798
GeneIDi101976496

Organism-specific databases

CTDi9410

Phylogenomic databases

eggNOGiKOG0265 Eukaryota
ENOG410XSEW LUCA
GeneTreeiENSGT00810000125363
InParanoidiI3M309
OrthoDBiEOG091G0DR4
TreeFamiTF300039

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR020472 G-protein_beta_WD-40_rep
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 7 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 7 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 5 hits
PS50082 WD_REPEATS_2, 7 hits
PS50294 WD_REPEATS_REGION, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiI3M309_ICTTR
AccessioniPrimary (citable) accession number: I3M309
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: November 22, 2017
Last modified: October 10, 2018
This is version 41 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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