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Protein
Submitted name:

DEAD-box helicase 28

Gene

DDX28

Organism
Sus scrofa (Pig)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
DEAD-box helicase 28Imported
Gene namesi
Name:DDX28Imported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
Proteomesi
  • UP000008227 Componenti: Chromosome 6

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiI3LB32
PRIDEiI3LB32

Expressioni

Gene expression databases

BgeeiENSSSCG00000026038

Interactioni

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000021251

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini126 – 156Q_MOTIFInterPro annotationAdd BLAST31
Domaini159 – 351Helicase ATP-bindingInterPro annotationAdd BLAST193
Domaini377 – 536Helicase C-terminalInterPro annotationAdd BLAST160

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi126 – 156Q motifPROSITE-ProRule annotationAdd BLAST31

Phylogenomic databases

eggNOGiKOG0330 Eukaryota
ENOG410XQU7 LUCA
GeneTreeiENSGT00730000110914
InParanoidiI3LB32
KOiK20096
OMAiLHCIMPH
OrthoDBiEOG091G06DC
TreeFamiTF324977

Family and domain databases

CDDicd00079 HELICc, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF00271 Helicase_C, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51195 Q_MOTIF, 1 hit

Sequencei

Sequence statusi: Complete.

I3LB32-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALARQLRLL SLVTRLHLAP RRDLTVRGPD EPLPVVRIPR ALQRRQEQRQ
60 70 80 90 100
RGQQGPPRPV LVRPGQLLIS ARRPELNQPA RLTLGRWEPA PLASRGWKNR
110 120 130 140 150
RARQDHFSIE RKQQEAPALR NLSSKDSFAD LGLEPRVLSA LQEAAPEVVR
160 170 180 190 200
PTTVQSSTIP PLLGGRHILC AAETGSGKTL GYMLPLLQRL LGQPSLDSCR
210 220 230 240 250
IPAPRGLVLV PSRELAEQVR AVAQPLGSSL GLQVRELGGG HGMSRIRLQL
260 270 280 290 300
SKQPPADVLV ATPGALWKGL KSQLISLEQL SFLVLDEADT LLDESFLELV
310 320 330 340 350
DYILEKSHIA EGPADLKDPF NPKAQLVLVG ATFPEGVSQL LSKAACLDSL
360 370 380 390 400
TTITSSKLHC IMPHVKQTFM RLKGAEKVTE LVQILKQHDR AYRTGSAGTV
410 420 430 440 450
LVFCNSSSTV NWLGYILDDH KIQHLRLQGQ MPASMRAGIF QSFQRGSQDI
460 470 480 490 500
LLCTDIASRG LDSTQVELVI NYDFPLTLQD YIHRAGRVGR VGSKVPGTVI
510 520 530 540
SFVTHPWDVS LVQKIELAAR RRRSLPGLGS SVREPLPQQT
Length:540
Mass (Da):59,553
Last modified:July 11, 2012 - v1
Checksum:i73F60AF8B8E490BA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AEMK02000040 Genomic DNA No translation available.
RefSeqiXP_003355824.1, XM_003355776.3
UniGeneiSsc.48892

Genome annotation databases

EnsembliENSSSCT00000027762; ENSSSCP00000021251; ENSSSCG00000026038
GeneIDi100621490
KEGGissc:100621490

Similar proteinsi

Entry informationi

Entry nameiI3LB32_PIG
AccessioniPrimary (citable) accession number: I3LB32
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: March 28, 2018
This is version 40 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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