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Entry version 43 (07 Apr 2021)
Sequence version 1 (11 Jul 2012)
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Protein
Submitted name:

Si:ch211-244a23.1

Gene

pkhd1l1.2

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-DRE-549127, Organic cation transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Si:ch211-244a23.1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:pkhd1l1.2Imported
Synonyms:si:ch211-244a23.1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri7955 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesDanionidaeDanioninaeDanio
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000437 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 19

Organism-specific databases

Zebrafish Information Network genome database

More...
ZFINi
ZDB-GENE-060503-789, pkhd1l1.2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei4179 – 4197HelicalSequence analysisAdd BLAST19

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 23Sequence analysisAdd BLAST23
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500367185724 – 4198Sequence analysisAdd BLAST4175

Keywords - PTMi

GlycoproteinARBA annotation

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
I3IS60

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSDARG00000040004, Expressed in head and 12 other tissues

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
7955.ENSDARP00000105859

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini327 – 483PA14InterPro annotationAdd BLAST157
Domaini2154 – 2274G8InterPro annotationAdd BLAST121
Domaini3013 – 3150G8InterPro annotationAdd BLAST138

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502QR85, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000157594

Identification of Orthologs from Complete Genome Data

More...
OMAi
GDPASND

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.160.20.10, 1 hit
2.60.40.10, 14 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR039448, Beta_helix
IPR008972, Cupredoxin
IPR019316, G8_domain
IPR013783, Ig-like_fold
IPR014756, Ig_E-set
IPR002909, IPT_dom
IPR037524, PA14/GLEYA
IPR006626, PbH1
IPR012334, Pectin_lyas_fold
IPR011050, Pectin_lyase_fold/virulence

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13229, Beta_helix, 1 hit
PF10162, G8, 2 hits
PF01833, TIG, 14 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01225, G8, 2 hits
SM00429, IPT, 12 hits
SM00710, PbH1, 10 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49503, SSF49503, 1 hit
SSF51126, SSF51126, 2 hits
SSF81296, SSF81296, 14 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51484, G8, 2 hits
PS51820, PA14, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

I3IS60-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRHLRLQLHL TLTVCILLSS AEAQRVDKLM PKYGSLNGGT RLTIWGQGFA
60 70 80 90 100
QASQFNLNAN DPNLGNKVTL VSTTRSITCD VDRDSSNSKQ IMCYTRALPE
110 120 130 140 150
DSYGVRVSVD GVPIPFSSIC NGNTWDYWCI FYSRSFRTPT IQSISPLSGP
160 170 180 190 200
PGTVVTMRGR IFTNVYGSMS TSSNGLDVKL SRAYMGGMPC EFLKPNSEEK
210 220 230 240 250
YGLKLDNGEW GYMSCKMTGT YIGHHNFSYI VSGEYGRSLP DFGVFSISAL
260 270 280 290 300
NKLAMFQTYA EVTGVSPSAG SMLGGTLLTI QGQNFDETDQ PAMVLVGGHE
310 320 330 340 350
CQIRSISNKK VVCVTPGYER KNVTVFPGGR GIKMETWDIS NLNNLEDVLM
360 370 380 390 400
YSSNMSGYSV QWVDSLSYVW PNGFHSFVAR LSGFFAPLES DNYYFRIKSV
410 420 430 440 450
GRSQLYFSKT GLPQDKVMIA SQPYYYYYTS FYGLSSQKSE VMRLEKLKPY
460 470 480 490 500
YIEVLVHGYS GSASVDVGFF KEISPFTAQQ AVEAVNEKQQ INAYYDVLPE
510 520 530 540 550
KQVVHFKGWK PTSAIREVQI LRISSACFSL NTCELTYYQL AYGNLTTGPI
560 570 580 590 600
LVSASAMDLQ NALNDLWTIK PDNVTVTKQE LDTESVYNVT FNSKRGDFED
610 620 630 640 650
LDYQIIDTDL NITVTEAVKG RASMETFTLL WAGVSSLPLP FNASEAEVYS
660 670 680 690 700
ALDLMITAKC PAEIPSSENS NVKFFRDYET ASTGFSGDLS RRGVQVSDSE
710 720 730 740 750
AFCGRWSLKN PEIIFSFHDT TASGAIYSPI LLQTYATLCL AYKGQLRNEL
760 770 780 790 800
GILFSYETAD TNREENIRVS VSFDSTEKWN YQCVDLLEYI QAKFEGSKYK
810 820 830 840 850
LLQLSVYGAA DYFIDAVHIG RSALDPYVIV HRRRPPALAS SGLFLSNIAV
860 870 880 890 900
SKQTNASQIS YEITATPYNC GFDVPLLEIG FLQKMPNSTV DLLIQSQGNA
910 920 930 940 950
TVTVMRPQKA SPPLTGTFDV EVFGRRVEGL TIDISAADLQ YALQGIPELG
960 970 980 990 1000
QLQVQRSGNC RGYTWNIQWL TIPGNQSLIK INASNVIGVN PSVTSQEVEK
1010 1020 1030 1040 1050
GGLFKQKIMG DFLRVPSNKP QVQVFINGIP SWCSGDCGFT WNDLKTPTVT
1060 1070 1080 1090 1100
GISPTEGSSS LGTVLTITGS GFDGGNVTVK TGDVECSILQ VTNTSITCQV
1110 1120 1130 1140 1150
GPASAGVQPV SLSFSVLGNA RYQNNTSFNF THLLGVTSIN PTTGSVAGGT
1160 1170 1180 1190 1200
VLTVSGYGFS NNIDVIIGSQ PCNIVEVELF QLRCIVPAGS EGDQTVTIGA
1210 1220 1230 1240 1250
GEMTAIFNDS FTYSNTLTAL ITSVSPQTTT VFGDRILTIL GMHFGEEPNG
1260 1270 1280 1290 1300
SSVLIGDAEC ELLQWTNDSI SCQLPTLPPA VYSVNIRVAN QGYPLTSPDI
1310 1320 1330 1340 1350
NTTIEYVLEV TGFSPSVGSL YGGTTITIIG SGFSLDIQDN TVTLGDTQCR
1360 1370 1380 1390 1400
VIAASDNELE CVAQPRDKTH TVTNQGSHSV YGQGYAWSPS ALITSVGDTV
1410 1420 1430 1440 1450
VWRWDAPAFV PGLGYRVFSV SNPSSTDYDG ISFSSGDRQT AKGFFAYRFT
1460 1470 1480 1490 1500
SPGVYYYSSG YIDSANEKTL QGVVTVMPLE ESTVELQVFV TGIKALVNLG
1510 1520 1530 1540 1550
QINSSEPECV ATSDCFQDQQ EFNDTSDGLY FTFTSCATPT VYDITPGHGT
1560 1570 1580 1590 1600
THDIINIRGS GFSNITCANE VKVGDLPCSV INSSSTEINC QLSPDSGAPV
1610 1620 1630 1640 1650
GVPLPITVQI NNLGNGLLTM PKEIDRRFVV LPVVDSIFPV VGSTTGSTRL
1660 1670 1680 1690 1700
LISGSGFFSG SVMVANIPCN VVSFDYSQIV CDTSPSVARS GDVTVYINSI
1710 1720 1730 1740 1750
SSSCSSDCTF EYSDSITPQV STVSPNSVNG NSTTVTVTGR GFGNNSADLM
1760 1770 1780 1790 1800
ISADNILLAV TEVNDSSIQV LVGALPAGTY NLTVVVMSKG LATGSATLTS
1810 1820 1830 1840 1850
IAQASINPTS GSIAGGTPLL ITGNGFVAGN TTVKLGNSLC KILDVTADTV
1860 1870 1880 1890 1900
RCLTPPRAEG QVQVNIKVFD VVYPPQNFNY SRQQTPNITS VTPKTGPVGT
1910 1920 1930 1940 1950
QITISGSGFG TDSAVVSLQI DSVACNISSI TDTQLLCTVG EHAGGTFPVM
1960 1970 1980 1990 2000
FNHQVKGYAL TQSVFKYELL LTGITPNEGS YAGGAVVAIQ GSGFDPNITK
2010 2020 2030 2040 2050
VLICNRECTV HLQDSTSTQL NCEVPPNNGS EALRTCTVMV MNGGDSVNLT
2060 2070 2080 2090 2100
SGYTYRSSLT PVITNITPRR GGTAGGTRLT ITGSGFSSNF SEIGVTIAGS
2110 2120 2130 2140 2150
VCDIQSANET QIICVTNAGP KSQETQVRVQ QGNRGIARMD NASFFYIDVW
2160 2170 2180 2190 2200
SSPYTWGGLS PPEEGMMVVI TAGQTILLDT STPVLKMLLI QGGRLIFDEA
2210 2220 2230 2240 2250
DIELQAENIL ITDGGALQIG TEQMPFQHKA IITLHGHLRS QELPVYGTKT
2260 2270 2280 2290 2300
LGVRQGVLDL HGIPVPVPWT RLSQTAQNGS STLTLMHAVT WKTGDEIVIA
2310 2320 2330 2340 2350
STGNRRSQRE NELRRIASVS ADGRTLTLTE PLTYTHLGVS VTLPDGMIFE
2360 2370 2380 2390 2400
ARAEVGLLTR NIVVRGSNNA EWNDQIPACP DGFDPGEFAT QTCFQGRFGE
2410 2420 2430 2440 2450
EVGSDQFGGC IMFHAPQPNQ NLAIGRIEYV ELFNVGQAFR LERYPIHWHL
2460 2470 2480 2490 2500
MGDVHFKSYV RGCSIHQSYN RAVSIHSTHN LLVEQNVIYN IMGGAFFIED
2510 2520 2530 2540 2550
GIETGNILQY NLAVFVKQST SLQNEDITPA AFWITNPNNT IRHNAVAGGT
2560 2570 2580 2590 2600
HFGFWYRMPD DFNDPIYDAY ICPKRVPLGQ FFNNTVHSQG WFGLWIFQDF
2610 2620 2630 2640 2650
FPMETGSCSY STPTPAVFRR LTSWNNEKGA EWVNVGSVQF SEFLMVNNEK
2660 2670 2680 2690 2700
AGVEAKRIIW HYVSGWGLDG GAAVVNSTMV GHVDELGLGS DYCTNRGIVL
2710 2720 2730 2740 2750
PLDDGMSVIN TTFVNFNRSS CAAVSLAEIA ESCSPRCGGW SARFSGIKFY
2760 2770 2780 2790 2800
HSPNKAWLRW EHEVALVDID GSLTGNVSNK VVPKNNLLDP RHCFPATEWS
2810 2820 2830 2840 2850
IGIPAAVCDN TINFHRMVIY YPSYTLWAKD VILTNSYGSS VLPFLYTFMT
2860 2870 2880 2890 2900
HSYGWMAMLP TGQTYNWLFN GASQITSISY YGMVYSFRPE NYVIINHNMT
2910 2920 2930 2940 2950
QTPDMVHIID YRSGSPEPLN STVNVNGDWY INQSSNSLYY MVSGRDRVSS
2960 2970 2980 2990 3000
RRKRNSVDRS LIDRYLVFNV YQCYYPKCIA PTFTPSPEVS FGPDTLQTPA
3010 3020 3030 3040 3050
NFTYVFSRWS NTSFWRSSPE NNFNVPQEGS DVIIPAYVWM VVDVVVPSLN
3060 3070 3080 3090 3100
KLKIAGVLEI PDTNNDTSIM QYNNVVLNAT YISIQGGRLI AGWPNEPFRG
3110 3120 3130 3140 3150
QLQIILRGSH TTPDWLLPYG TNQGSKVLGV FGSLDLYGMP HNVYHTKLAS
3160 3170 3180 3190 3200
TSQAGNSTLS LQESVDWKAG DKILLSTTSY DPWQTEIRTI AAVSDYGRTL
3210 3220 3230 3240 3250
TLDQPLTYTH IGESYSVPGT SRSYQLAGNV ALLTRNIQII GQEYPDMFTE
3260 3270 3280 3290 3300
SYGARVLVGT FSGFRGKAQI RNVQFYHTGQ EGWNDLSDPR YSLVFLNLGW
3310 3320 3330 3340 3350
VAGESYISGC SFHDGFAPAI GIFGTDGLSI DDNVIHHTVG EGISVKGDSN
3360 3370 3380 3390 3400
VIQRNLVTLT LWPGSYNGRA EDFNFQWNAA IEVNEATNVT LKGNIVAGYE
3410 3420 3430 3440 3450
RVGFRIDGEP CPESEAQWSQ NEAHGGLYGL YMNRDGLPGC SQIQGFTVWR
3460 3470 3480 3490 3500
SFDFGIYVQV SMNVLISNVT LIDNGMGIMS LIYNPPSISH MYADKSVRVQ
3510 3520 3530 3540 3550
GALIVGNSPN FNCLDSLSTT MTFVSLSRSH RAPRPPSGGR SGVCWPTFES
3560 3570 3580 3590 3600
YHNSGPQNLL TGLTSYSAIA GLMTISDTTF IGFQNVCSTE RNYMFMTNPG
3610 3620 3630 3640 3650
NEDLQHPISV ERITMINSTE DSLAFIHRPD LSKVNPSDCV DMDCDAKKKT
3660 3670 3680 3690 3700
MLKDLDGSFL GAVGAVVPQS EYEWNGNPRH GLGDYRIPKV MLTYLNGSRI
3710 3720 3730 3740 3750
PVNQISPYKG VIRSNCTYMS TWQSYKCFGL NYKMLVIESL DTDTETRRLS
3760 3770 3780 3790 3800
PVAILGDKYV DLINGPQDHS WCSGYTCRKR ISLFHAIVAT NKSFDIYFTS
3810 3820 3830 3840 3850
TTPQKLRLML LNAGPTESVR VAVFYSNPQR LDVYVNNSLV GPTNAQWNVD
3860 3870 3880 3890 3900
KTDYTLLEPT YTGQYFPSFN ASHGSNFLDQ DYKMMNILLR GSDPVQIRTS
3910 3920 3930 3940 3950
PVLFVAFNLP AMTEAEFFGP NLINNLAAFL KIPPYKIRIT KIIREGTNAR
3960 3970 3980 3990 4000
RRRSTGLTVQ VEIREPPAQT TTNSTTDNTQ QFDVLKNIAD DLGRAAVSGN
4010 4020 4030 4040 4050
LSQSIGFNVS SMGIIPPPPS SSDPAWNNVA TQEVTRADQQ VETVKTVSSL
4060 4070 4080 4090 4100
KVVVQPQAGS SLGPLSVQPS IMALDSAGDC VSVGVTSLTL SAVLKDANGN
4110 4120 4130 4140 4150
LVNGLYGNTT IPFSVCWANY TDLAINTSCG SCQNLKLVFT LTQWNAESRS
4160 4170 4180 4190
FTLRSPTTPS SVGNGFPNIF GSSPAISTMS VYLLILFSAL LLLLQCYE
Length:4,198
Mass (Da):458,316
Last modified:July 11, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4AC406411278DB46
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A8E7R5A8E7R5_DANRE
Si:ch211-244a23.1
pkhd1l1.2 si:ch211-244a23.1
3,895Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F1QXX9F1QXX9_DANRE
Si:ch211-244a23.1
pkhd1l1.2 si:ch211-244a23.1
4,183Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
BX649562 Genomic DNA No translation available.

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSDART00000151737; ENSDARP00000125726; ENSDARG00000040004

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX649562 Genomic DNA No translation available.

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000105859

Proteomic databases

PaxDbiI3IS60

Genome annotation databases

EnsembliENSDART00000151737; ENSDARP00000125726; ENSDARG00000040004

Organism-specific databases

ZFINiZDB-GENE-060503-789, pkhd1l1.2

Phylogenomic databases

eggNOGiENOG502QR85, Eukaryota
GeneTreeiENSGT00940000157594
OMAiGDPASND

Enzyme and pathway databases

ReactomeiR-DRE-549127, Organic cation transport

Gene expression databases

BgeeiENSDARG00000040004, Expressed in head and 12 other tissues

Family and domain databases

Gene3Di2.160.20.10, 1 hit
2.60.40.10, 14 hits
InterProiView protein in InterPro
IPR039448, Beta_helix
IPR008972, Cupredoxin
IPR019316, G8_domain
IPR013783, Ig-like_fold
IPR014756, Ig_E-set
IPR002909, IPT_dom
IPR037524, PA14/GLEYA
IPR006626, PbH1
IPR012334, Pectin_lyas_fold
IPR011050, Pectin_lyase_fold/virulence
PfamiView protein in Pfam
PF13229, Beta_helix, 1 hit
PF10162, G8, 2 hits
PF01833, TIG, 14 hits
SMARTiView protein in SMART
SM01225, G8, 2 hits
SM00429, IPT, 12 hits
SM00710, PbH1, 10 hits
SUPFAMiSSF49503, SSF49503, 1 hit
SSF51126, SSF51126, 2 hits
SSF81296, SSF81296, 14 hits
PROSITEiView protein in PROSITE
PS51484, G8, 2 hits
PS51820, PA14, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiI3IS60_DANRE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: I3IS60
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: April 7, 2021
This is version 43 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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