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Protein

ATP-dependent RNA helicase RhlB

Gene

rhlB

Organism
Shimwellia blattae (strain ATCC 29907 / DSM 4481 / JCM 1650 / NBRC 105725 / CDC 9005-74) (Escherichia blattae)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA.UniRule annotationSAAS annotation

Catalytic activityi

ATP + H2O = ADP + phosphate.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHelicaseUniRule annotationSAAS annotationImported, Hydrolase, RNA-bindingUniRule annotationSAAS annotation
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciSBLA630626:G1H59-3804-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-dependent RNA helicase RhlBUniRule annotationSAAS annotation (EC:3.6.4.13UniRule annotationSAAS annotation)
Gene namesi
Name:rhlBUniRule annotationImported
Ordered Locus Names:EBL_c38040Imported
OrganismiShimwellia blattae (strain ATCC 29907 / DSM 4481 / JCM 1650 / NBRC 105725 / CDC 9005-74) (Escherichia blattae)Imported
Taxonomic identifieri630626 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeShimwellia
Proteomesi
  • UP000001955 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Component of the RNA degradosome, which is a multiprotein complex involved in RNA processing and mRNA degradation.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 37Q_MOTIFInterPro annotationAdd BLAST29
Domaini40 – 219Helicase ATP-bindingInterPro annotationAdd BLAST180
Domaini245 – 390Helicase C-terminalInterPro annotationAdd BLAST146

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi9 – 37Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family. RhlB subfamily.UniRule annotationSAAS annotation

Phylogenomic databases

KOiK03732
OMAiRNPIRIL
OrthoDBiPOG091H01ST

Family and domain databases

CDDicd00079 HELICc, 1 hit
HAMAPiMF_00661 DEAD_helicase_RhlB, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000629 RNA-helicase_DEAD-box_CS
IPR023554 RNA_helicase_ATP-dep_RhlB
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF00271 Helicase_C, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00039 DEAD_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51195 Q_MOTIF, 1 hit

Sequencei

Sequence statusi: Complete.

I2BE85-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTHLTDKK FSDFALHPQV VEALEKKGFT NCTHIQALAL PLTLAGKDVA
60 70 80 90 100
GQAQTGTGKT MAFLTSTFHY LLSHPAHENR QVNQPRALIM APTRELAVQI
110 120 130 140 150
HSDAEPLAEA TGLKLGLAYG GDGYDKQLKV LESGVDILIG TTGRLIDYTK
160 170 180 190 200
QNYVNMGAIQ VVVLDEADRM YDLGFIKDIR WLFRRMPPAT ERLNMLFSAT
210 220 230 240 250
LSYRVRELAF EQMNNAEYVE VEPEQKTGHR IKEELFYPSN DEKMRLLQTL
260 270 280 290 300
IEEEWPDRAI IFANTKHRCE DIWGHLAADG HRVGLLTGDV AQKKRLRILD
310 320 330 340 350
DFTHGNLDIL VATDVAARGL HIPEVTHVFN YDLPDDCEDY VHRIGRTGRA
360 370 380 390 400
GASGSSISLA CEEYALNLPA IENYIGHSIP VSKYNPDALL TELPPPKRLT
410 420
RARPGNNNQR RGNANRNRRR AG
Length:422
Mass (Da):47,344
Last modified:July 11, 2012 - v1
Checksum:i21902DDB5A9C6135
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001560 Genomic DNA Translation: AFJ48839.1
RefSeqiWP_002444147.1, NZ_BAHA01000027.1

Genome annotation databases

EnsemblBacteriaiAFJ48839; AFJ48839; EBL_c38040
KEGGiebt:EBL_c38040
PATRICifig|630626.3.peg.3708

Similar proteinsi

Entry informationi

Entry nameiI2BE85_SHIBC
AccessioniPrimary (citable) accession number: I2BE85
Secondary accession number(s): K6VKF5
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: March 28, 2018
This is version 45 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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