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Protein
Submitted name:

Uncharacterized protein

Gene
N/A
Organism
Oryza glaberrima (African rice)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
OrganismiOryza glaberrima (African rice)Imported
Taxonomic identifieri4538 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000007306 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi4538.ORGLA03G0409400.1

Structurei

3D structure databases

ProteinModelPortaliI1PI98
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 54HTH myb-typeInterPro annotationAdd BLAST54
Domaini55 – 105HTH myb-typeInterPro annotationAdd BLAST51

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
OMAiENRDDQA
OrthoDBiEOG09360OJP

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR015495 Myb-like_TF
IPR017930 Myb_dom
IPR001005 SANT/Myb
PANTHERiPTHR10641 PTHR10641, 1 hit
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits

Sequencei

Sequence statusi: Complete.

I1PI98-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MCTRGHWRPS EDEKLKELVA RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL
60 70 80 90 100
DPRINRSPFT EEEEELLLAS HRAHGNRWAV IARLFPGRTD NAVKNHWHVI
110 120 130 140 150
MARRCRERMR LSNRRGGAAA AGAAKGDESP ARISNGEKTA TRPPATNGSG
160 170 180 190 200
MAMASLLDKY RRECGAAGLF AIGRHHNSKE DYCSSTNEDT SKSVEFYDFL
210 220 230 240
QVNASSSDTK CGSSIEEQED NRDDDQAEGQ VQLIDFMEVG TTSRQ
Length:245
Mass (Da):27,526
Last modified:June 13, 2012 - v1
Checksum:i6C2967109F36623B
GO

Genome annotation databases

EnsemblPlantsiORGLA03G0409400.1; ORGLA03G0409400.1; ORGLA03G0409400
GrameneiORGLA03G0409400.1; ORGLA03G0409400.1; ORGLA03G0409400

Similar proteinsi

Cross-referencesi

3D structure databases

ProteinModelPortaliI1PI98
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4538.ORGLA03G0409400.1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiORGLA03G0409400.1; ORGLA03G0409400.1; ORGLA03G0409400
GrameneiORGLA03G0409400.1; ORGLA03G0409400.1; ORGLA03G0409400

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
OMAiENRDDQA
OrthoDBiEOG09360OJP

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR015495 Myb-like_TF
IPR017930 Myb_dom
IPR001005 SANT/Myb
PANTHERiPTHR10641 PTHR10641, 1 hit
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiI1PI98_ORYGL
AccessioniPrimary (citable) accession number: I1PI98
Entry historyiIntegrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: November 7, 2018
This is version 29 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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