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Entry version 44 (26 Feb 2020)
Sequence version 1 (13 Jun 2012)
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Protein
Submitted name:

Uncharacterized protein

Gene

104585443

Organism
Brachypodium distachyon (Purple false brome) (Trachynia distachya)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:104585443Imported
ORF Names:BRADI_5g23300v3Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBrachypodium distachyon (Purple false brome) (Trachynia distachya)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri15368 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaLiliopsidaPoalesPoaceaeBOP cladePooideaeBrachypodieaeBrachypodium
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000008810 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
I1J2C5 baseline and differential

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini559 – 640RWP-RKInterPro annotationAdd BLAST82
Domaini853 – 935PB1InterPro annotationAdd BLAST83

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 29DisorderedSequence analysisAdd BLAST29
Regioni99 – 140DisorderedSequence analysisAdd BLAST42
Regioni651 – 700DisorderedSequence analysisAdd BLAST50
Regioni812 – 850DisorderedSequence analysisAdd BLAST39

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi666 – 700PolarSequence analysisAdd BLAST35
Compositional biasi820 – 836PolarSequence analysisAdd BLAST17

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IKM4 Eukaryota
ENOG410YA7W LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_008971_0_0_1

Identification of Orthologs from Complete Genome Data

More...
OMAi
PSNRAGC

Database of Orthologous Groups

More...
OrthoDBi
100342at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR000270 PB1_dom
IPR003035 RWP-RK_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00564 PB1, 1 hit
PF02042 RWP-RK, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00666 PB1, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51745 PB1, 1 hit
PS51519 RWP_RK, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

I1J2C5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDVPAPSSRA GCNRNMGSPV TEPSDDPYGV PATMNFDGYL ELCSPSLADQ
60 70 80 90 100
LYSLVNDPSA HQMFAMWSSL GSSPRASGMS EDMPLGAYAG VSEAVAAAPP
110 120 130 140 150
QKNDLVASEN PAETGRVARS SGEPGADSDP GQGRTSLVPR PVGGNFLADR
160 170 180 190 200
MLMALSFFRE SLGDGVLAQV WMPVEQEGHA VLSTSDQPFL LDQSLAGYRE
210 220 230 240 250
VSRNFVFSAK EETGLHPGLP GRVFISGVPE WTSNVLYYSK PEYLRMEYAL
260 270 280 290 300
HHEVRGSLAM PIYDPSKGSC CAVLELITKR EKPDFNAEMD NVRQALQAVN
310 320 330 340 350
LKTTKDCSNQ KFYTENQKAA FTEILDVLRA ICHAHMLPLA LTWVPMSNGI
360 370 380 390 400
DGAYVVGRDG GLGSQSGKEI LCVHESACYV NDAKMKGFFH ACAESPLEKG
410 420 430 440 450
QGIAGRALKS NLPFFSPNIR EYNIKDYPLA HHARKFGLHA AVAIRLRSTY
460 470 480 490 500
TGNDDYILEF FLPINCKGSE EQQMLLNNLS STMQRICKSL RTVAESEVDK
510 520 530 540 550
VDARNAVLYK TTSESVSPTG HSESSSHCDK PITEASFQDL SLVDKQGYME
560 570 580 590 600
PEQVQSSSMR LAEKKRSTAE KNISLDVLRK YFSGSLKDAA KSLGVCPTTL
610 620 630 640 650
KRICRAHGIS RWPSRKINKV NRSLKKIQTV INSVHGVDSS LQYDPGTGSL
660 670 680 690 700
VPAASLPEKR PASSTDALPA LSSGKTVEQK SVPKSEQAYS SPDGWQSESY
710 720 730 740 750
QVQLSDAEKG EGGEFHMQTS NHSDIGNHTS YGANVTPHVS PEGTQGQSYP
760 770 780 790 800
VGTVSAFHPK ETGCVSPFVS ARPTAENTGD QIVGRNSPSL QQADIDMVDD
810 820 830 840 850
AFQKTNMVDD HEAREHTHPS TSGMTDSSSG SASSHPTFKK EPGHALKGKS
860 870 880 890 900
GPTLTVKATY NGDTVRFKFL PSQGWYQLLE EIAKRFKLST GTFQLKYKDD
910 920 930 940 950
EDEWVILAND SDLQECVEVM DSMGSCNVKL QVRDLPCLIS SSSGSSTCLR

LPT
Length:953
Mass (Da):103,608
Last modified:June 13, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB328DE8D141364B5
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0Q3IF86A0A0Q3IF86_BRADI
Uncharacterized protein
104585443 BRADI_5g23300v3
782Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CM000884 Genomic DNA Translation: KQJ84855.1

NCBI Reference Sequences

More...
RefSeqi
XP_010240492.1, XM_010242190.2

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
KQJ84855; KQJ84855; BRADI_5g23300v3

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
104585443

Gramene; a comparative resource for plants

More...
Gramenei
KQJ84855; KQJ84855; BRADI_5g23300v3

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
bdi:104585443

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000884 Genomic DNA Translation: KQJ84855.1
RefSeqiXP_010240492.1, XM_010242190.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblPlantsiKQJ84855; KQJ84855; BRADI_5g23300v3
GeneIDi104585443
GrameneiKQJ84855; KQJ84855; BRADI_5g23300v3
KEGGibdi:104585443

Phylogenomic databases

eggNOGiENOG410IKM4 Eukaryota
ENOG410YA7W LUCA
HOGENOMiCLU_008971_0_0_1
OMAiPSNRAGC
OrthoDBi100342at2759

Gene expression databases

ExpressionAtlasiI1J2C5 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR000270 PB1_dom
IPR003035 RWP-RK_dom
PfamiView protein in Pfam
PF00564 PB1, 1 hit
PF02042 RWP-RK, 1 hit
SMARTiView protein in SMART
SM00666 PB1, 1 hit
PROSITEiView protein in PROSITE
PS51745 PB1, 1 hit
PS51519 RWP_RK, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiI1J2C5_BRADI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: I1J2C5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: February 26, 2020
This is version 44 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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