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Protein
Submitted name:

DEAD-domain-containing protein

Gene

COCSUDRAFT_16341

Organism
Coccomyxa subellipsoidea (strain C-169) (Green microalga)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

Keywordsi

Molecular functionHelicaseUniRule annotation, Hydrolase
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
DEAD-domain-containing proteinImported
Gene namesi
ORF Names:COCSUDRAFT_16341Imported
OrganismiCoccomyxa subellipsoidea (strain C-169) (Green microalga)Imported
Taxonomic identifieri574566 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaTrebouxiophyceaeTrebouxiophyceae incertae sedisCoccomyxaceaeCoccomyxa
Proteomesi
  • UP000007264 Componenti: Unassembled WGS sequence

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini117 – 145Q_MOTIFInterPro annotationAdd BLAST29
Domaini148 – 322Helicase ATP-bindingInterPro annotationAdd BLAST175
Domaini333 – 506Helicase C-terminalInterPro annotationAdd BLAST174

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili515 – 545Sequence analysisAdd BLAST31

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi117 – 145Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

KOiK13181

Family and domain databases

CDDicd00079 HELICc, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000629 RNA-helicase_DEAD-box_CS
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF00271 Helicase_C, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
PROSITEiView protein in PROSITE
PS00039 DEAD_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51195 Q_MOTIF, 1 hit

Sequencei

Sequence statusi: Complete.

I0YWB3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSSVVYLQPS GRAAPGKGSN GRPEAHSESK DSDESDEEVS DDEDAPLPGE
60 70 80 90 100
IDDDDSDVAD EDAVDIDSEE EDLPEADDDD DDAEESDEQE EQQIEESESD
110 120 130 140 150
AEDFYAQTPD GTKFSASAFS DLHLSRPLLK ACTALGYINP TPIQAACIPL
160 170 180 190 200
ALAGRDICGS AITGSGKTAA FALPLLERLL FRNRRIAATY GLVLTPTREL
210 220 230 240 250
AVQVHSMITN LAQFTDIRIA LVVGGLSLQV QSATLRTSPE VVVATPGRLI
260 270 280 290 300
DHLRNTQSVG LEDLQALVLD EADRLLQMGF SEEIKEVLRL TPRKRQTLLF
310 320 330 340 350
SATMTEEVRD LAALSLQRPV RLAADAAGAA PRSLTQEIVR FKGAAGPAAR
360 370 380 390 400
EGTLLALCAR SFRLGRTIVF FSTKHSAHRA KILFGLAGLP PAAELHGNMT
410 420 430 440 450
QAARLESLEK FRKGEAAFLL ATDVAARGLD ILGVDAVINY DAPPALSAYL
460 470 480 490 500
HRIGRTARAG RAGRAVTFAD DSTRSLLKDV VKKTGAKLLI RSVQPEIVAQ
510 520 530 540 550
WTQRIHSLGR DIARIDLAER EEMELRKAEM EAQKAENMVA HEAEIAARPP
560 570 580 590 600
RTWFQTAKEK VASVDRSALS TAAHSLLCIH LMSRITAEIC VLMSRTPRRN
610 620 630 640 650
HALSTRGCPQ RRPVAALLFM QIHACLVPGR GSSPFRWSGL AGWFSEGLRV
660
CAVASSCFLS GC
Length:662
Mass (Da):71,699
Last modified:June 13, 2012 - v1
Checksum:i6C02F4376C3C7B3E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGSI01000009 Genomic DNA Translation: EIE22682.1
RefSeqiXP_005647226.1, XM_005647169.1

Genome annotation databases

GeneIDi17040669
KEGGicsl:COCSUDRAFT_16341

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGSI01000009 Genomic DNA Translation: EIE22682.1
RefSeqiXP_005647226.1, XM_005647169.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi17040669
KEGGicsl:COCSUDRAFT_16341

Phylogenomic databases

KOiK13181

Family and domain databases

CDDicd00079 HELICc, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000629 RNA-helicase_DEAD-box_CS
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF00271 Helicase_C, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
PROSITEiView protein in PROSITE
PS00039 DEAD_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51195 Q_MOTIF, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiI0YWB3_COCSC
AccessioniPrimary (citable) accession number: I0YWB3
Entry historyiIntegrated into UniProtKB/TrEMBL: June 13, 2012
Last sequence update: June 13, 2012
Last modified: October 25, 2017
This is version 27 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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