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Entry version 62 (26 Feb 2020)
Sequence version 1 (16 May 2012)
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Protein
Submitted name:

Conjugal transfer pilus assembly protein

Gene

TraH

Organism
Salmonella typhimurium
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Conjugal transfer pilus assembly proteinImported
Submitted name:
Conjugal transfer pilus assembly protein TraHImported
Submitted name:
Conjugative transfer: assemblyImported
Submitted name:
TraHImported
Submitted name:
Trah pilus assembly protein trahImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:TraHImported
Synonyms:traHImported, traH_1Imported
ORF Names:ABO94_22430Imported, AF480_26345Imported, AF488_25815Imported, AIC76_24520Imported, AXR84_24650Imported, AXU58_23250Imported, CD48_24550Imported, CE87_21795Imported, CET98_21355Imported, D4369_18165Imported, D4380_19170Imported, D4401_17695Imported, D4E62_21685Imported, D6360_16975Imported, D7H43_23940Imported, DJ388_19295Imported, DKU57_16765Imported, DOJ90_21930Imported, DOQ88_23505Imported, DQ848_15565Imported, DRM14_23475Imported, DSR36_15715Imported, DUW48_21095Imported, EBO41_15605Imported, EBP31_16235Imported, EHB24_15180Imported, EHC98_16980Imported, EIW53_14115Imported, GW08_23465Imported, JO10_22925Imported, NCTC13348_01287Imported, NG18_22565Imported, p6919o015Imported, p8934bo015Imported, QB40_19105Imported, QD15_14150Imported, RJ78_26045Imported, SAMEA4398682_05175Imported, YI33_21585Imported, YR17_19995Imported, ZB89_16750Imported, ZC54_17035Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid pSBLTImported
Plasmid pSal6919aImported
Plasmid pSal8934bImported
Plasmid pYT1Imported
Plasmid pYT2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSalmonella typhimuriumImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri90371 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeSalmonella
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000277261 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 26Sequence analysisAdd BLAST26
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_501457688727 – 460Sequence analysisAdd BLAST434

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili399 – 426Sequence analysisAdd BLAST28

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis, SignalSequence analysis

Phylogenomic databases

KEGG Orthology (KO)

More...
KOi
K12072

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR010927 T4SS_TraH

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF06122 TraH, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

H9L4K6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQGKTRIKPL FILCTALMTV APAVSADVNS DMNQFFNKLG FASNTTQPSV
60 70 80 90 100
WQGQAAGYAS GGSLYARTQV KNVQLVSMTL PDINAGCGGI DAYLGSFSFI
110 120 130 140 150
NGEQLQRFVK QIMSNAAGYF FDLALQTTVP EIKTAKDFLQ KMASDINSMN
160 170 180 190 200
LSSCQAAQGI VGGLFPKTQV SQQKVCQDIA GESNIFADWA ASRQGCTVGG
210 220 230 240 250
QSDSVRDKAS DKDKERVTKN INIMWNALSK NRMFDGNKEL KEFVMTLTGS
260 270 280 290 300
LVFGPNGEIM PLPARTTDRA IIRALMEGGT AKIYHCNDSD KCLKVVADTP
310 320 330 340 350
VTISRDNALK SQITKLLTSI QNKAVSDTPL DNKEKGFISS TTIPVFKYLV
360 370 380 390 400
DPQMLGVSTS MIYQLTDYIG YDILLQYIQE LIQQARAMVA TGNYDEAVIE
410 420 430 440 450
HITDNMNDAT RQIASFQAQV QVQQDALLVV DRQMSYMRQQ LSARMLSRYQ
460
NNYHFGGGAQ
Length:460
Mass (Da):50,535
Last modified:May 16, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD6E48375C69CEBF3
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
JF274991 Genomic DNA Translation: AEX00704.1
JF274992 Genomic DNA Translation: AEX00844.1
AB576781 Genomic DNA Translation: BAJ15397.1
AB605179 Genomic DNA Translation: BAL48764.1
LN794247 Genomic DNA Translation: CEO37188.1
AAAAJL010000019 Genomic DNA Translation: EAA0853518.1
AAAALU010000035 Genomic DNA Translation: EAA1161051.1
AAABHL010000041 Genomic DNA Translation: EAA3845079.1
AAABIE010000044 Genomic DNA Translation: EAA3864066.1
AAABXQ010000025 Genomic DNA Translation: EAA5770715.1
AAACCL010000016 Genomic DNA Translation: EAA6354950.1
AAACDS010000018 Genomic DNA Translation: EAA6486648.1
AAACKB010000018 Genomic DNA Translation: EAA7216714.1
AAACKA010000041 Genomic DNA Translation: EAA7298138.1
AAACLH010000046 Genomic DNA Translation: EAA7450514.1
AAACMS010000028 Genomic DNA Translation: EAA7667916.1
AAACOB010000053 Genomic DNA Translation: EAA7814656.1
AAACPZ010000040 Genomic DNA Translation: EAA8003357.1
AAACSV010000022 Genomic DNA Translation: EAA8348845.1
AAACUH010000023 Genomic DNA Translation: EAA8508298.1
AAACTG010000038 Genomic DNA Translation: EAA8550599.1
AAACXJ010000030 Genomic DNA Translation: EAA8929335.1
AAADEE010000037 Genomic DNA Translation: EAA9727931.1
AAAFFB010000016 Genomic DNA Translation: EAB5974301.1
AAAFEY010000015 Genomic DNA Translation: EAB6023111.1
AAAFLB010000019 Genomic DNA Translation: EAB6677834.1
AAAFOM010000018 Genomic DNA Translation: EAB7114403.1
AAAFOU010000022 Genomic DNA Translation: EAB7138310.1
AAAFOJ010000017 Genomic DNA Translation: EAB7194539.1
AAAFRD010000020 Genomic DNA Translation: EAB7471083.1
AAAFRV010000031 Genomic DNA Translation: EAB7514471.1
AAAFYT010000019 Genomic DNA Translation: EAB8454344.1
AAAFZR010000013 Genomic DNA Translation: EAB8514880.1
AAAFZS010000048 Genomic DNA Translation: EAB8562566.1
AAAGCC010000020 Genomic DNA Translation: EAB8743084.1
AAAGBU010000029 Genomic DNA Translation: EAB8823788.1
AAAGLW010000015 Genomic DNA Translation: EAB9960398.1
AAAGPP010000026 Genomic DNA Translation: EAC0511026.1
AAAGQC010000018 Genomic DNA Translation: EAC0528908.1
AAAGVF010000013 Genomic DNA Translation: EAC1146504.1
AAAGVW010000017 Genomic DNA Translation: EAC1298705.1
AAAHBU010000027 Genomic DNA Translation: EAC1708957.1
RVDJ01000036 Genomic DNA Translation: MLP88219.1
CAADIU010000007 Genomic DNA Translation: VFS15407.1
CABIII010000003 Genomic DNA Translation: VUZ13117.1

NCBI Reference Sequences

More...
RefSeqi
WP_001161719.1, NZ_VKKR01000017.1
YP_003264469.1, NC_013437.1
YP_003864248.1, NC_014476.2
YP_006955202.1, NC_019108.1
YP_006955342.1, NC_019109.1
YP_006955643.1, NC_019001.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
KKE06661; KKE06661; TJ44_23620

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
13909756
13910320
13910580
40104988
8541902
9715274

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
seni:CY43_24505

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|90371.1185.peg.5108

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JF274991 Genomic DNA Translation: AEX00704.1
JF274992 Genomic DNA Translation: AEX00844.1
AB576781 Genomic DNA Translation: BAJ15397.1
AB605179 Genomic DNA Translation: BAL48764.1
LN794247 Genomic DNA Translation: CEO37188.1
AAAAJL010000019 Genomic DNA Translation: EAA0853518.1
AAAALU010000035 Genomic DNA Translation: EAA1161051.1
AAABHL010000041 Genomic DNA Translation: EAA3845079.1
AAABIE010000044 Genomic DNA Translation: EAA3864066.1
AAABXQ010000025 Genomic DNA Translation: EAA5770715.1
AAACCL010000016 Genomic DNA Translation: EAA6354950.1
AAACDS010000018 Genomic DNA Translation: EAA6486648.1
AAACKB010000018 Genomic DNA Translation: EAA7216714.1
AAACKA010000041 Genomic DNA Translation: EAA7298138.1
AAACLH010000046 Genomic DNA Translation: EAA7450514.1
AAACMS010000028 Genomic DNA Translation: EAA7667916.1
AAACOB010000053 Genomic DNA Translation: EAA7814656.1
AAACPZ010000040 Genomic DNA Translation: EAA8003357.1
AAACSV010000022 Genomic DNA Translation: EAA8348845.1
AAACUH010000023 Genomic DNA Translation: EAA8508298.1
AAACTG010000038 Genomic DNA Translation: EAA8550599.1
AAACXJ010000030 Genomic DNA Translation: EAA8929335.1
AAADEE010000037 Genomic DNA Translation: EAA9727931.1
AAAFFB010000016 Genomic DNA Translation: EAB5974301.1
AAAFEY010000015 Genomic DNA Translation: EAB6023111.1
AAAFLB010000019 Genomic DNA Translation: EAB6677834.1
AAAFOM010000018 Genomic DNA Translation: EAB7114403.1
AAAFOU010000022 Genomic DNA Translation: EAB7138310.1
AAAFOJ010000017 Genomic DNA Translation: EAB7194539.1
AAAFRD010000020 Genomic DNA Translation: EAB7471083.1
AAAFRV010000031 Genomic DNA Translation: EAB7514471.1
AAAFYT010000019 Genomic DNA Translation: EAB8454344.1
AAAFZR010000013 Genomic DNA Translation: EAB8514880.1
AAAFZS010000048 Genomic DNA Translation: EAB8562566.1
AAAGCC010000020 Genomic DNA Translation: EAB8743084.1
AAAGBU010000029 Genomic DNA Translation: EAB8823788.1
AAAGLW010000015 Genomic DNA Translation: EAB9960398.1
AAAGPP010000026 Genomic DNA Translation: EAC0511026.1
AAAGQC010000018 Genomic DNA Translation: EAC0528908.1
AAAGVF010000013 Genomic DNA Translation: EAC1146504.1
AAAGVW010000017 Genomic DNA Translation: EAC1298705.1
AAAHBU010000027 Genomic DNA Translation: EAC1708957.1
RVDJ01000036 Genomic DNA Translation: MLP88219.1
CAADIU010000007 Genomic DNA Translation: VFS15407.1
CABIII010000003 Genomic DNA Translation: VUZ13117.1
RefSeqiWP_001161719.1, NZ_VKKR01000017.1
YP_003264469.1, NC_013437.1
YP_003864248.1, NC_014476.2
YP_006955202.1, NC_019108.1
YP_006955342.1, NC_019109.1
YP_006955643.1, NC_019001.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiKKE06661; KKE06661; TJ44_23620
GeneIDi13909756
13910320
13910580
40104988
8541902
9715274
KEGGiseni:CY43_24505
PATRICifig|90371.1185.peg.5108

Phylogenomic databases

KOiK12072

Family and domain databases

InterProiView protein in InterPro
IPR010927 T4SS_TraH
PfamiView protein in Pfam
PF06122 TraH, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiH9L4K6_SALTM
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: H9L4K6
Secondary accession number(s): A0A0M2IMP9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 16, 2012
Last sequence update: May 16, 2012
Last modified: February 26, 2020
This is version 62 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

PlasmidImported
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