UniProtKB - H9GFJ1 (H9GFJ1_ANOCA)
Protein
RNA helicase
Gene
DDX28
Organism
Anolis carolinensis (Green anole) (American chameleon)
Status
Functioni
GO - Molecular functioni
- ATP binding Source: UniProtKB-KW
- RNA helicase activity Source: UniProtKB-EC
- rRNA binding Source: Ensembl
GO - Biological processi
- mitochondrial large ribosomal subunit assembly Source: GO_Central
Keywordsi
Molecular function | HydrolaseARBA annotation |
Ligand | ATP-bindingARBA annotation, Nucleotide-binding |
Names & Taxonomyi
Protein namesi | |
Gene namesi | Name:DDX28Imported |
Organismi | Anolis carolinensis (Green anole) (American chameleon)Imported |
Taxonomic identifieri | 28377 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Lepidosauria › Squamata › Bifurcata › Unidentata › Episquamata › Toxicofera › Iguania › Dactyloidae › Anolis |
Proteomesi |
|
Subcellular locationi
Cytosol
- cytosol Source: Ensembl
Mitochondrion
- mitochondrial nucleoid Source: Ensembl
- mitochondrion Source: GO_Central
Nucleus
- nucleolus Source: Ensembl
- nucleoplasm Source: Ensembl
Other locations
- ribonucleoprotein granule Source: Ensembl
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 19 | Sequence analysisAdd BLAST | 19 | |
ChainiPRO_5003619359 | 20 – 537 | RNA helicaseSequence analysisAdd BLAST | 518 |
Expressioni
Gene expression databases
Bgeei | ENSACAG00000009755, Expressed in female gonad and 14 other tissues |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 128 – 157 | Q_MOTIFInterPro annotationAdd BLAST | 30 | |
Domaini | 160 – 353 | Helicase ATP-bindingInterPro annotationAdd BLAST | 194 | |
Domaini | 379 – 533 | Helicase C-terminalInterPro annotationAdd BLAST | 155 |
Motif
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Motifi | 128 – 157 | Q motifPROSITE-ProRule annotationAdd BLAST | 30 |
Keywords - Domaini
SignalSequence analysisPhylogenomic databases
eggNOGi | KOG0330, Eukaryota |
GeneTreei | ENSGT00940000161738 |
HOGENOMi | CLU_003041_1_3_1 |
InParanoidi | H9GFJ1 |
OMAi | CIMPHVK |
TreeFami | TF324977 |
Family and domain databases
InterProi | View protein in InterPro IPR011545, DEAD/DEAH_box_helicase_dom IPR014001, Helicase_ATP-bd IPR001650, Helicase_C IPR027417, P-loop_NTPase IPR014014, RNA_helicase_DEAD_Q_motif |
Pfami | View protein in Pfam PF00270, DEAD, 1 hit PF00271, Helicase_C, 1 hit |
SMARTi | View protein in SMART SM00487, DEXDc, 1 hit SM00490, HELICc, 1 hit |
SUPFAMi | SSF52540, SSF52540, 1 hit |
PROSITEi | View protein in PROSITE PS51192, HELICASE_ATP_BIND_1, 1 hit PS51194, HELICASE_CTER, 1 hit PS51195, Q_MOTIF, 1 hit |
i Sequence
Sequence statusi: Complete.
H9GFJ1-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
VSLSEAMAVL LLLRRPSLAW FSPAWRCWSS GDEALEVVRI PQAWRRRLEE
60 70 80 90 100
RQASGKEGPE SFGGKQRKML LRSRRRELSQ ALGRTVGRWE KPRLVSDGWK
110 120 130 140 150
HRLSRGDHFQ LERTRKEALQ EEEGGEGLSF PALGLDPQFV TILEGAFGIS
160 170 180 190 200
RPTPVQKRAI PVLLKGSNTL CGAETGSGKT LAYLLPLVQR LLTSSHLPHK
210 220 230 240 250
TGATTHPRSL VVLPSRELAG QVRSVAAQLC APLGLEVRGI GGGRGMGSIR
260 270 280 290 300
RKIHDVSVDL LIATPGALCK ALRRHMVSLE QLLCLVLDEA DTLLDPSFVD
310 320 330 340 350
LVRDLLQQTP LASNRKEATD VWDPKTQVVA VGATLPKGLG ELLSEVADSS
360 370 380 390 400
SFRTITGYGL HYLQPHVEQK FMRLKGSDKV TEVLQLLKDR GPMSGAVLIF
410 420 430 440 450
CNGASTVNWL SYILDDHKIK HLRLQGQMQA DMRAGIFDNF QKGHSDILVC
460 470 480 490 500
TDIASRGLDT TRVELVINYD FPYTLHDYLH RVGRVGRIGS TFPGTAVSFV
510 520 530
THRWDVDLVR KIETAARKRT CLPGLEPIVQ KPLSKKK
Genome annotation databases
Ensembli | ENSACAT00000009737; ENSACAP00000009540; ENSACAG00000009755 |
Similar proteinsi
Cross-referencesi
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 28377.ENSACAP00000009540 |
Genome annotation databases
Ensembli | ENSACAT00000009737; ENSACAP00000009540; ENSACAG00000009755 |
Phylogenomic databases
eggNOGi | KOG0330, Eukaryota |
GeneTreei | ENSGT00940000161738 |
HOGENOMi | CLU_003041_1_3_1 |
InParanoidi | H9GFJ1 |
OMAi | CIMPHVK |
TreeFami | TF324977 |
Gene expression databases
Bgeei | ENSACAG00000009755, Expressed in female gonad and 14 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR011545, DEAD/DEAH_box_helicase_dom IPR014001, Helicase_ATP-bd IPR001650, Helicase_C IPR027417, P-loop_NTPase IPR014014, RNA_helicase_DEAD_Q_motif |
Pfami | View protein in Pfam PF00270, DEAD, 1 hit PF00271, Helicase_C, 1 hit |
SMARTi | View protein in SMART SM00487, DEXDc, 1 hit SM00490, HELICc, 1 hit |
SUPFAMi | SSF52540, SSF52540, 1 hit |
PROSITEi | View protein in PROSITE PS51192, HELICASE_ATP_BIND_1, 1 hit PS51194, HELICASE_CTER, 1 hit PS51195, Q_MOTIF, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | H9GFJ1_ANOCA | |
Accessioni | H9GFJ1Primary (citable) accession number: H9GFJ1 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | May 16, 2012 |
Last sequence update: | May 16, 2012 | |
Last modified: | October 7, 2020 | |
This is version 54 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |