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Protein
Submitted name:

E3 ubiquitin-protein ligase RNF13

Gene

RNF13

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
E3 ubiquitin-protein ligase RNF13Imported
Gene namesi
Name:RNF13Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 3

Organism-specific databases

EuPathDBiHostDB:ENSG00000082996.19
HGNCiHGNC:10057 RNF13

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 36HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000082996

PTM / Processingi

Proteomic databases

MaxQBiH7C5Q6
PeptideAtlasiH7C5Q6
PRIDEiH7C5Q6

Expressioni

Gene expression databases

BgeeiENSG00000082996 Expressed in 239 organ(s), highest expression level in corpus callosum
ExpressionAtlasiH7C5Q6 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliH7C5Q6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000119057

Family and domain databases

Gene3Di3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR013083 Znf_RING/FYVE/PHD

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 12 potential isoforms that are computationally mapped.Show allAlign All

H7C5Q6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
XVPEFSLPLE YYLIPFLIIV GICLILIVIF MITKFVQDRH RARRNRLRKD
60 70 80 90 100
QLKKLPVHKF KKAYHCKCVD PWLTKTKKTC PVCKQKVVPS QGDSDSDTDS
110 120 130 140 150
SQEENEVTEH TPLLRPLASV SAQSFGALSE SRSHQNMTES SDYEEDDNED
160 170 180
TDSSDAENEI NEHDVVVQLQ PNGERDYNIA NTV
Length:183
Mass (Da):20,948
Last modified:April 18, 2012 - v1
Checksum:i5E2B62A869D811B1
GO

Computationally mapped potential isoform sequencesi

There are 12 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
O43567RNF13_HUMAN
E3 ubiquitin-protein ligase RNF13
RNF13 RZF
381Annotation score:
C9J383C9J383_HUMAN
E3 ubiquitin-protein ligase RNF13
RNF13
192Annotation score:
C9JYN7C9JYN7_HUMAN
E3 ubiquitin-protein ligase RNF13
RNF13
165Annotation score:
C9J8T4C9J8T4_HUMAN
E3 ubiquitin-protein ligase RNF13
RNF13
163Annotation score:
C9JRV0C9JRV0_HUMAN
E3 ubiquitin-protein ligase RNF13
RNF13
115Annotation score:
C9IY58C9IY58_HUMAN
E3 ubiquitin-protein ligase RNF13
RNF13
232Annotation score:
C9JCY0C9JCY0_HUMAN
E3 ubiquitin-protein ligase RNF13
RNF13
233Annotation score:
C9J7B4C9J7B4_HUMAN
E3 ubiquitin-protein ligase RNF13
RNF13
150Annotation score:
F8WDJ5F8WDJ5_HUMAN
E3 ubiquitin-protein ligase RNF13
RNF13
140Annotation score:
C9JU37C9JU37_HUMAN
E3 ubiquitin-protein ligase RNF13
RNF13
72Annotation score:
There are more potential isoformsShow all

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069216 Genomic DNA No translation available.
AC117395 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000468289; ENSP00000420510; ENSG00000082996
UCSCiuc062oyq.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069216 Genomic DNA No translation available.
AC117395 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliH7C5Q6
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiH7C5Q6
PeptideAtlasiH7C5Q6
PRIDEiH7C5Q6

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000468289; ENSP00000420510; ENSG00000082996
UCSCiuc062oyq.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000082996.19
HGNCiHGNC:10057 RNF13
OpenTargetsiENSG00000082996
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00760000119057

Miscellaneous databases

ChiTaRSiRNF13 human

Gene expression databases

BgeeiENSG00000082996 Expressed in 239 organ(s), highest expression level in corpus callosum
ExpressionAtlasiH7C5Q6 baseline and differential

Family and domain databases

Gene3Di3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR013083 Znf_RING/FYVE/PHD
ProtoNetiSearch...

Entry informationi

Entry nameiH7C5Q6_HUMAN
AccessioniPrimary (citable) accession number: H7C5Q6
Entry historyiIntegrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: September 12, 2018
This is version 31 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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