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Protein
Submitted name:

Cytochrome oxidase subunit II

Gene

COII

Organism
Caenorhabditis sinica
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Biological processElectron transport, Respiratory chainSAAS annotation, Transport
LigandCopperSAAS annotation, Metal-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Cytochrome oxidase subunit IIImported
Gene namesi
Name:COIIImported
Encoded oniMitochondrionImported
OrganismiCaenorhabditis sinicaImported
Taxonomic identifieri1550068 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaRhabditomorphaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei38 – 60HelicalSequence analysisAdd BLAST23
Transmembranei72 – 96HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Membrane, MitochondrionImported

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 100COX2_TMInterPro annotationAdd BLAST92
Domaini102 – 235COX2_CUAInterPro annotationAdd BLAST134

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Family and domain databases

CDDicd13912 CcO_II_C, 1 hit
Gene3Di1.10.287.90, 1 hit
2.60.40.420, 1 hit
InterProiView protein in InterPro
IPR002429 CcO_II-like_C
IPR034210 CcO_II_C
IPR001505 Copper_CuA
IPR008972 Cupredoxin
IPR011759 Cyt_c_oxidase_su2_TM_dom
IPR036257 Cyt_c_oxidase_su2_TM_sf
PfamiView protein in Pfam
PF00116 COX2, 1 hit
SUPFAMiSSF49503 SSF49503, 1 hit
SSF81464 SSF81464, 1 hit
PROSITEiView protein in PROSITE
PS00078 COX2, 1 hit
PS50857 COX2_CUA, 1 hit
PS50999 COX2_TM, 1 hit

Sequencei

Sequence statusi: Fragment.

H6WDF3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
IKGFQGLINN FFQGYNLLFQ HSLFASYMDW FHAFNCSLLL GVLVFVTLLF
60 70 80 90 100
GYLIFGTFYF KSKKIEYQFG ELLCSIFPTI ILLMQMVPSL SLLYYYGLMN
110 120 130 140 150
LDSNLTVKVT GHQWYWSYEY SDIPGLEFDS YMKSLDQLNL GEPRLLEVDN
160 170 180 190 200
RCVIPCDTNI RFCITSADVI HAWALNSLSV KLDAMSGILS TFSYSFPMVG
210 220 230
VFYGQCSEIC GANHSFMPIA LEVTLLDNFK SWCFGTME
Length:238
Mass (Da):27,286
Last modified:April 18, 2012 - v1
Checksum:i27C87F64FEB084A4
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JQ219381 Genomic DNA Translation: AFA55992.1
JQ219389 Genomic DNA Translation: AFA56000.1
JQ219401 Genomic DNA Translation: AFA56012.1
JQ219409 Genomic DNA Translation: AFA56020.1
JQ219414 Genomic DNA Translation: AFA56025.1
JQ219417 Genomic DNA Translation: AFA56028.1

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JQ219381 Genomic DNA Translation: AFA55992.1
JQ219389 Genomic DNA Translation: AFA56000.1
JQ219401 Genomic DNA Translation: AFA56012.1
JQ219409 Genomic DNA Translation: AFA56020.1
JQ219414 Genomic DNA Translation: AFA56025.1
JQ219417 Genomic DNA Translation: AFA56028.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

CDDicd13912 CcO_II_C, 1 hit
Gene3Di1.10.287.90, 1 hit
2.60.40.420, 1 hit
InterProiView protein in InterPro
IPR002429 CcO_II-like_C
IPR034210 CcO_II_C
IPR001505 Copper_CuA
IPR008972 Cupredoxin
IPR011759 Cyt_c_oxidase_su2_TM_dom
IPR036257 Cyt_c_oxidase_su2_TM_sf
PfamiView protein in Pfam
PF00116 COX2, 1 hit
SUPFAMiSSF49503 SSF49503, 1 hit
SSF81464 SSF81464, 1 hit
PROSITEiView protein in PROSITE
PS00078 COX2, 1 hit
PS50857 COX2_CUA, 1 hit
PS50999 COX2_TM, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiH6WDF3_9PELO
AccessioniPrimary (citable) accession number: H6WDF3
Entry historyiIntegrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: November 7, 2018
This is version 34 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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