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Protein
Submitted name:

Uncharacterized protein

Gene

WBGene00100032

Organism
Pristionchus pacificus (Parasitic nematode)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi6 – 82Nuclear receptorPROSITE-ProRule annotationAdd BLAST77

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation, ReceptorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:WBGene00100032Imported
OrganismiPristionchus pacificus (Parasitic nematode)Imported
Taxonomic identifieri54126 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaDiplogasteridaNeodiplogasteridaePristionchus
Proteomesi
  • UP000005239 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi54126.PPA10478

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 82Nuclear receptorInterPro annotationAdd BLAST77
Domaini155 – 401NR LBDInterPro annotationAdd BLAST247

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotationSAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3575 Eukaryota
ENOG410XRZC LUCA
InParanoidiH3EL38
OMAiYEMCNGR
OrthoDBiEOG091G0F2E

Family and domain databases

Gene3Di3.30.50.10, 1 hit
InterProiView protein in InterPro
IPR035500 NHR_like_dom_sf
IPR000536 Nucl_hrmn_rcpt_lig-bd
IPR001628 Znf_hrmn_rcpt
IPR013088 Znf_NHR/GATA
PfamiView protein in Pfam
PF00104 Hormone_recep, 1 hit
PF00105 zf-C4, 1 hit
PRINTSiPR00047 STROIDFINGER
SMARTiView protein in SMART
SM00430 HOLI, 1 hit
SM00399 ZnF_C4, 1 hit
SUPFAMiSSF48508 SSF48508, 1 hit
PROSITEiView protein in PROSITE
PS51843 NR_LBD, 1 hit
PS00031 NUCLEAR_REC_DBD_1, 1 hit
PS51030 NUCLEAR_REC_DBD_2, 1 hit

Sequencei

Sequence statusi: Complete.

H3EL38-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYREKRGLCR ICSDKSDGAH FGVDSCRACA AFFRRSIVMK KKYVCRQGGH
60 70 80 90 100
NCNINKSVRC MCRKCRFVKC LQCGMLPESV QTKEAATASS STSAKKPSAP
110 120 130 140 150
STTLPLNTSN QQHTNDMQGQ GTSSGSSSVP APLPVYSTGV TKLMQIDNQY
160 170 180 190 200
KMLCSLRRST EMSMSANDMR GIFESACSDM RPTTFSNLNK LVKSTIPMLA
210 220 230 240 250
DFCGDCFPQF TELGQEEKWS VFQNFMGAMW NTESIYRTHK IFPNDISKKV
260 270 280 290 300
CSFTTYIDLD NLDMFLSDTT TKMDVKHFGN LIRKNIVDAV RRIIRMLARI
310 320 330 340 350
EVTDLEFAAL LGLLMWPPYL PKASERVVEM ALGIRELIFR ELHVYYSSIL
360 370 380 390 400
RMEDYAGRLG ELMSLYSSLQ WSTNRMKEDM EIFKLFDIFE EDSFFYDIIK

K
Length:401
Mass (Da):45,773
Last modified:April 18, 2012 - v1
Checksum:iE29E7E91E11B526F
GO

Genome annotation databases

EnsemblMetazoaiPPA10478; PPA10478; PPA10478

Entry informationi

Entry nameiH3EL38_PRIPA
AccessioniPrimary (citable) accession number: H3EL38
Entry historyiIntegrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: June 20, 2018
This is version 49 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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