Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

DNA polymerase

Gene

WBGene00094547

Organism
Pristionchus pacificus (Parasitic nematode)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotation, DNA-directed DNA polymeraseUniRule annotation, Nucleotidyltransferase, Transferase
Biological processDNA replicationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
DNA polymeraseUniRule annotation (EC:2.7.7.7UniRule annotation)
Gene namesi
Name:WBGene00094547Imported
OrganismiPristionchus pacificus (Parasitic nematode)Imported
Taxonomic identifieri54126 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaDiplogasteromorphaDiplogasteroideaNeodiplogasteridaePristionchus
Proteomesi
  • UP000005239 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi54126.PPA04993

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini180 – 528DNA_pol_B_exo1InterPro annotationAdd BLAST349
Domaini587 – 809DNA_pol_BInterPro annotationAdd BLAST223

Sequence similaritiesi

Belongs to the DNA polymerase type-B family.UniRule annotation

Phylogenomic databases

eggNOGiKOG0970 Eukaryota
COG0417 LUCA
InParanoidiH3E5L9
OMAiQXILMHT
OrthoDBiEOG091G00RR

Family and domain databases

Gene3Di3.30.420.10, 1 hit
3.90.1600.10, 1 hit
InterProiView protein in InterPro
IPR006172 DNA-dir_DNA_pol_B
IPR017964 DNA-dir_DNA_pol_B_CS
IPR006133 DNA-dir_DNA_pol_B_exonuc
IPR006134 DNA-dir_DNA_pol_B_multi_dom
IPR023211 DNA_pol_palm_dom_sf
IPR012337 RNaseH-like_sf
IPR036397 RNaseH_sf
PfamiView protein in Pfam
PF00136 DNA_pol_B, 1 hit
PF03104 DNA_pol_B_exo1, 1 hit
PRINTSiPR00106 DNAPOLB
SMARTiView protein in SMART
SM00486 POLBc, 1 hit
SUPFAMiSSF53098 SSF53098, 1 hit
PROSITEiView protein in PROSITE
PS00116 DNA_POLYMERASE_B, 1 hit

Sequencei

Sequence statusi: Complete.

H3E5L9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTRAIPRSRL SVPLSASSPR PAPVAAAAAA KTVPVKRPAT MSVTPPPVAE
60 70 80 90 100
KRQKHKEESF DDDFDTGFDV DMDDVGMTNN DERMEESAAP APVKVESKPV
110 120 130 140 150
VKMEQPRVEQ ETMINDWSVE QKDPTPSVVS IAQGSESFYQ ERDGRQCLRV
160 170 180 190 200
FWLDAYEDDR KHPGVVYLFG RVFTSAGRSS SICIVVKNIR RQLFFLPRVQ
210 220 230 240 250
EDGTPYPMLD VYNEVKDLLM NTHGIQEVKC KASKRRFIND GTVPEPAEDV
260 270 280 290 300
EVIEVQYFEG KNSRIAPAYE GKSFTRVYNA TTTSMERLLV ECRMKGPGWI
310 320 330 340 350
NVANCAPATS KVSWCTYEFV LDMADDMSGV ERPKNIVFDT ATMDAAPPLR
360 370 380 390 400
LMCLNVVTAL NAKKEPEILA LSYLVNTSAS IEGPSTDMKY YRNKAFICEP
410 420 430 440 450
PTGVALPFDL QRKLDERGLR EDRVKIVKTE KALLAQFLNL LSSEEKELEP
460 470 480 490 500
DAYVGHDLQA TIALLMAKCE KHKIGAWSRL SRLRRSTAAK QLGHSKAAIW
510 520 530 540 550
EATAGRLMFD SRAAAMELFP SRQYDLTELC RTLLNKDRTE VAPHEVIAKY
560 570 580 590 600
CGSSAGIINL LSESWQECYR PLCILEQIQA IPLFRGITNI CGGVMSRTLL
610 620 630 640 650
GGRAERNELL LLHAFHRSQL IAPDKYQHVF ADKAKAGKGK VKKETQSSSQ
660 670 680 690 700
TEDDVEEKGG EEKAGEPAKT GGAQYSGGLV LEPKKGLYDT LVLLLDFNSL
710 720 730 740 750
YPSIIQQFNI CFTTIRHDKN GDELPEEPKG VSAKGILPTE IENLVSQRFS
760 770 780 790 800
VKALMKNEKN PEKYKQYDIR QKALKLTANS MYGCLGFAQS RFYAKPLAAL
810 820 830 840 850
VTAKGREVIY GDTDSIMVNT GDLDQERAKK IAAEITKMVN QRYRQIELEH
860 870 880 890 900
EGTFRRMLLL KKKKYAALIM PPRPGMAPKK ELKGLDIVRR DWSMLAKKIG
910 920 930 940 950
SDVVDVMLDP SLSREELVEQ IDKLLTTLRE DLDAGIVSVD MFSIFKFLTR
960 970
QSRRGVSPWV DIAVLTVDCD HT
Length:972
Mass (Da):108,958
Last modified:April 18, 2012 - v1
Checksum:i2B3FC6CF7FE00D71
GO

Genome annotation databases

EnsemblMetazoaiPPA04993; PPA04993; PPA04993

Cross-referencesi

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi54126.PPA04993

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiPPA04993; PPA04993; PPA04993

Phylogenomic databases

eggNOGiKOG0970 Eukaryota
COG0417 LUCA
InParanoidiH3E5L9
OMAiQXILMHT
OrthoDBiEOG091G00RR

Family and domain databases

Gene3Di3.30.420.10, 1 hit
3.90.1600.10, 1 hit
InterProiView protein in InterPro
IPR006172 DNA-dir_DNA_pol_B
IPR017964 DNA-dir_DNA_pol_B_CS
IPR006133 DNA-dir_DNA_pol_B_exonuc
IPR006134 DNA-dir_DNA_pol_B_multi_dom
IPR023211 DNA_pol_palm_dom_sf
IPR012337 RNaseH-like_sf
IPR036397 RNaseH_sf
PfamiView protein in Pfam
PF00136 DNA_pol_B, 1 hit
PF03104 DNA_pol_B_exo1, 1 hit
PRINTSiPR00106 DNAPOLB
SMARTiView protein in SMART
SM00486 POLBc, 1 hit
SUPFAMiSSF53098 SSF53098, 1 hit
PROSITEiView protein in PROSITE
PS00116 DNA_POLYMERASE_B, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiH3E5L9_PRIPA
AccessioniPrimary (citable) accession number: H3E5L9
Entry historyiIntegrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: November 7, 2018
This is version 36 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again