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Protein
Submitted name:

Katanin p80 WD40 repeat-containing subunit B1

Gene

KATNB1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Katanin p80 WD40 repeat-containing subunit B1Imported
Gene namesi
Name:KATNB1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 16

Organism-specific databases

EuPathDBiHostDB:ENSG00000140854.12
HGNCiHGNC:6217 KATNB1

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000140854

PTM / Processingi

Proteomic databases

MaxQBiH3BTV8
PeptideAtlasiH3BTV8
PRIDEiH3BTV8

Expressioni

Gene expression databases

BgeeiENSG00000140854 Expressed in 216 organ(s), highest expression level in right frontal lobe
ExpressionAtlasiH3BTV8 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliH3BTV8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini16 – 79WD_REPEATS_REGIONInterPro annotationAdd BLAST64
Repeati16 – 58WDPROSITE-ProRule annotationAdd BLAST43

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0267 Eukaryota
ENOG410XQAC LUCA
GeneTreeiENSGT00810000125363

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 1 hit
SMARTiView protein in SMART
SM00320 WD40, 1 hit
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 1 hit
PS50294 WD_REPEATS_REGION, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 5 potential isoforms that are computationally mapped.Show allAlign All

H3BTV8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MATPVVTKTA WKLQEIVAHA SNVSSLVLGK ASGRLLATGG DDCRVNLWSI
60 70
NKPNCIMSLT GHTSPVESVR LNTPEELIV
Length:79
Mass (Da):8,428
Last modified:April 18, 2012 - v1
Checksum:i025FAEF972B5E36D
GO

Computationally mapped potential isoform sequencesi

There are 5 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q9BVA0KTNB1_HUMAN
Katanin p80 WD40 repeat-containing ...
KATNB1
655Annotation score:
H3BTU7H3BTU7_HUMAN
Katanin p80 WD40 repeat-containing ...
KATNB1
276Annotation score:
H3BPK1H3BPK1_HUMAN
Katanin p80 WD40 repeat-containing ...
KATNB1
210Annotation score:
H3BPD8H3BPD8_HUMAN
Katanin p80 WD40 repeat-containing ...
KATNB1
208Annotation score:
H3BT67H3BT67_HUMAN
Katanin p80 WD40 repeat-containing ...
KATNB1
117Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei79Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC018552 Genomic DNA No translation available.
AC092118 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000566785; ENSP00000457347; ENSG00000140854
UCSCiuc059uxa.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC018552 Genomic DNA No translation available.
AC092118 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliH3BTV8
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiH3BTV8
PeptideAtlasiH3BTV8
PRIDEiH3BTV8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000566785; ENSP00000457347; ENSG00000140854
UCSCiuc059uxa.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000140854.12
HGNCiHGNC:6217 KATNB1
OpenTargetsiENSG00000140854
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0267 Eukaryota
ENOG410XQAC LUCA
GeneTreeiENSGT00810000125363

Miscellaneous databases

ChiTaRSiKATNB1 human

Gene expression databases

BgeeiENSG00000140854 Expressed in 216 organ(s), highest expression level in right frontal lobe
ExpressionAtlasiH3BTV8 baseline and differential

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 1 hit
SMARTiView protein in SMART
SM00320 WD40, 1 hit
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 1 hit
PS50294 WD_REPEATS_REGION, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiH3BTV8_HUMAN
AccessioniPrimary (citable) accession number: H3BTV8
Entry historyiIntegrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: September 12, 2018
This is version 49 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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