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Protein
Submitted name:

Uncharacterized protein

Gene

RBM45

Organism
Latimeria chalumnae (West Indian ocean coelacanth)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:RBM45Imported
OrganismiLatimeria chalumnae (West Indian ocean coelacanth)Imported
Taxonomic identifieri7897 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiCoelacanthiformesCoelacanthidaeLatimeria
Proteomesi
  • UP000008672 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi7897.ENSLACP00000004192

Structurei

3D structure databases

ProteinModelPortaliH3A3H1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 99RRMInterPro annotationAdd BLAST89
Domaini114 – 197RRMInterPro annotationAdd BLAST84
Domaini254 – 322RRMInterPro annotationAdd BLAST69
Domaini394 – 466RRMInterPro annotationAdd BLAST73

Phylogenomic databases

eggNOGiENOG410IEKU Eukaryota
ENOG410XP9Z LUCA
GeneTreeiENSGT00680000100059
InParanoidiH3A3H1
OMAiGEIQDIW
OrthoDBiEOG091G0L6Q
TreeFamiTF324216

Family and domain databases

CDDicd12366 RRM1_RBM45, 1 hit
cd12367 RRM2_RBM45, 1 hit
cd12368 RRM3_RBM45, 1 hit
cd12369 RRM4_RBM45, 1 hit
Gene3Di3.30.70.330, 4 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR034203 RBM45_RRM1
IPR034206 RBM45_RRM2
IPR034207 RBM45_RRM3
IPR034208 RBM45_RRM4
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 4 hits
SMARTiView protein in SMART
SM00360 RRM, 4 hits
SUPFAMiSSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 4 hits

Sequencei

Sequence statusi: Complete.

H3A3H1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEEGNNFKPS VDNLDDPPNS RVFLVISKST PKEVIREKFS PFGEIQDIWV
60 70 80 90 100
VKDKQTKERK GVAFVKFARS SQACRAMEEM HGRSLSDDTK PIKVFIAQSR
110 120 130 140 150
ASGSHRDVED EELTRIFVMI PKSYTEDDLR EKFKAYGDIE YCSIIKNKNT
160 170 180 190 200
GESKGLGYVR YLKPSEAALA IENCDRNFRA ILAEPKNKAL PFSESEYYVG
210 220 230 240 250
SSGNGGGRQQ EHIGQPDPGI NMLQFAEFYS FGKNDLRDHE NISKCLSVAS
260 270 280 290 300
RVCLTQEQLF NLFDLIPGLE YCEVQRDPYS GYNKGQALVR YNNVASAIYA
310 320 330 340 350
REKLHGFDYP PGNMLVVTYF DDGSSRSNSV GIMASQLVAA QMMSMVCTSP
360 370 380 390 400
VGQQIVKTAS DYGESSSSYT PRIQSDVVLP PPQKFASTDS RVKERLFLVF
410 420 430 440 450
NPAPLPLDIL EDVFCRFGYL IEVYLVPGRN VGYAKFANRT SANDAITAIH
460 470
GKVINGVKLK VMLADPPKEE SYKRQRTH
Length:478
Mass (Da):53,638
Last modified:April 18, 2012 - v1
Checksum:iE34D3E8F188E3136
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AFYH01241420 Genomic DNA No translation available.
AFYH01241421 Genomic DNA No translation available.
AFYH01241422 Genomic DNA No translation available.
AFYH01241423 Genomic DNA No translation available.
AFYH01241424 Genomic DNA No translation available.
RefSeqiXP_006012349.1, XM_006012287.1

Genome annotation databases

EnsembliENSLACT00000004229; ENSLACP00000004192; ENSLACG00000003728
GeneIDi102363009
KEGGilcm:102363009

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AFYH01241420 Genomic DNA No translation available.
AFYH01241421 Genomic DNA No translation available.
AFYH01241422 Genomic DNA No translation available.
AFYH01241423 Genomic DNA No translation available.
AFYH01241424 Genomic DNA No translation available.
RefSeqiXP_006012349.1, XM_006012287.1

3D structure databases

ProteinModelPortaliH3A3H1
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7897.ENSLACP00000004192

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSLACT00000004229; ENSLACP00000004192; ENSLACG00000003728
GeneIDi102363009
KEGGilcm:102363009

Organism-specific databases

CTDi129831

Phylogenomic databases

eggNOGiENOG410IEKU Eukaryota
ENOG410XP9Z LUCA
GeneTreeiENSGT00680000100059
InParanoidiH3A3H1
OMAiGEIQDIW
OrthoDBiEOG091G0L6Q
TreeFamiTF324216

Family and domain databases

CDDicd12366 RRM1_RBM45, 1 hit
cd12367 RRM2_RBM45, 1 hit
cd12368 RRM3_RBM45, 1 hit
cd12369 RRM4_RBM45, 1 hit
Gene3Di3.30.70.330, 4 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR034203 RBM45_RRM1
IPR034206 RBM45_RRM2
IPR034207 RBM45_RRM3
IPR034208 RBM45_RRM4
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 4 hits
SMARTiView protein in SMART
SM00360 RRM, 4 hits
SUPFAMiSSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 4 hits
ProtoNetiSearch...

Entry informationi

Entry nameiH3A3H1_LATCH
AccessioniPrimary (citable) accession number: H3A3H1
Entry historyiIntegrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: November 7, 2018
This is version 38 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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