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Protein
Submitted name:

POLR1C isoform 2

Gene

POLR1C

Organism
Pan troglodytes (Chimpanzee)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
POLR1C isoform 2Imported
Submitted name:
Polymerase (RNA) I polypeptide C, 30kDaImported
Submitted name:
RNA polymerase I subunit CImported
Gene namesi
Name:POLR1CImported
ORF Names:CK820_G0007269Imported
OrganismiPan troglodytes (Chimpanzee)Imported
Taxonomic identifieri9598 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaePan
Proteomesi
  • UP000002277 Componenti: Chromosome 6

Organism-specific databases

VGNCiVGNC:8725 POLR1C

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSPTRG00000018202 Expressed in 6 organ(s), highest expression level in testis

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi9598.ENSPTRP00000031108

Structurei

3D structure databases

SMRiH2QT27
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini60 – 339RPOLDInterPro annotationAdd BLAST280

Phylogenomic databases

eggNOGiKOG1521 Eukaryota
COG0202 LUCA
GeneTreeiENSGT00550000075060
KOiK03027
OMAiRGKDHAK
OrthoDBiEOG091G03FZ
TreeFamiTF103034

Family and domain databases

CDDicd07032 RNAP_I_II_AC40, 1 hit
Gene3Di2.170.120.12, 1 hit
InterProiView protein in InterPro
IPR001514 DNA-dir_RNA_pol_30-40kDasu_CS
IPR011262 DNA-dir_RNA_pol_insert
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR036603 RBP11-like
IPR033901 RNAPI/II_AC40
IPR036643 RNApol_insert_sf
PANTHERiPTHR11800:SF13 PTHR11800:SF13, 1 hit
PfamiView protein in Pfam
PF01000 RNA_pol_A_bac, 1 hit
PF01193 RNA_pol_L, 1 hit
SMARTiView protein in SMART
SM00662 RPOLD, 1 hit
SUPFAMiSSF55257 SSF55257, 2 hits
SSF56553 SSF56553, 1 hit
PROSITEiView protein in PROSITE
PS00446 RNA_POL_D_30KD, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

H2QT27-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAASQAVEEM RSRVVLGEFG VRNVHTTDFP GNYSGYDDAW DQDRFEKNFR
60 70 80 90 100
VDVVHMDENS LEFDMVGIDA AIANAFRRIL LAEVPTMAVE KVLVYNNTSI
110 120 130 140 150
VQDEILAHRL GLIPIHADPR LFEYRNQGDE EGTEIDTLQF RLQVRCTRNP
160 170 180 190 200
HAAKDSSDPN ELYVNHKVYT RHMTWIPLGN QADLFPEGTI RPVHDDILIA
210 220 230 240 250
QLRPGQEIDL LMHCVKGIGK DHAKFSPVAT ASYRLLPDIT LLEPVEGEAA
260 270 280 290 300
EELSRCFSPG VIEVQEVQGK KVARVANPRL DTFSREIFRN EKLKKVVRLA
310 320 330 340
RVRDHYIFSV ESTGVLPPDV LVSEAIKVLM GKCRRFLDEL DAVQMD
Length:346
Mass (Da):39,250
Last modified:March 21, 2012 - v1
Checksum:iB7D558BC8F33D92E
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2I3SZS6A0A2I3SZS6_PANTR
RNA polymerase I and III subunit C
POLR1C
350Annotation score:
A0A2I3S985A0A2I3S985_PANTR
POLR1C isoform 6
POLR1C CK820_G0007269
342Annotation score:
A0A2I3RWP4A0A2I3RWP4_PANTR
POLR1C isoform 5
POLR1C CK820_G0007269
296Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACZ04022883 Genomic DNA No translation available.
GABC01007731 mRNA Translation: JAA03607.1
GABF01010130 mRNA Translation: JAA12015.1
GABD01006099 mRNA Translation: JAA27001.1
GABE01006875 mRNA Translation: JAA37864.1
NBAG03000221 Genomic DNA Translation: PNI77441.1
RefSeqiXP_001136605.2, XM_001136605.4

Genome annotation databases

EnsembliENSPTRT00000033663; ENSPTRP00000031108; ENSPTRG00000018202
GeneIDi736609
KEGGiptr:736609

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACZ04022883 Genomic DNA No translation available.
GABC01007731 mRNA Translation: JAA03607.1
GABF01010130 mRNA Translation: JAA12015.1
GABD01006099 mRNA Translation: JAA27001.1
GABE01006875 mRNA Translation: JAA37864.1
NBAG03000221 Genomic DNA Translation: PNI77441.1
RefSeqiXP_001136605.2, XM_001136605.4

3D structure databases

SMRiH2QT27
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9598.ENSPTRP00000031108

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSPTRT00000033663; ENSPTRP00000031108; ENSPTRG00000018202
GeneIDi736609
KEGGiptr:736609

Organism-specific databases

CTDi9533
VGNCiVGNC:8725 POLR1C

Phylogenomic databases

eggNOGiKOG1521 Eukaryota
COG0202 LUCA
GeneTreeiENSGT00550000075060
KOiK03027
OMAiRGKDHAK
OrthoDBiEOG091G03FZ
TreeFamiTF103034

Gene expression databases

BgeeiENSPTRG00000018202 Expressed in 6 organ(s), highest expression level in testis

Family and domain databases

CDDicd07032 RNAP_I_II_AC40, 1 hit
Gene3Di2.170.120.12, 1 hit
InterProiView protein in InterPro
IPR001514 DNA-dir_RNA_pol_30-40kDasu_CS
IPR011262 DNA-dir_RNA_pol_insert
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR036603 RBP11-like
IPR033901 RNAPI/II_AC40
IPR036643 RNApol_insert_sf
PANTHERiPTHR11800:SF13 PTHR11800:SF13, 1 hit
PfamiView protein in Pfam
PF01000 RNA_pol_A_bac, 1 hit
PF01193 RNA_pol_L, 1 hit
SMARTiView protein in SMART
SM00662 RPOLD, 1 hit
SUPFAMiSSF55257 SSF55257, 2 hits
SSF56553 SSF56553, 1 hit
PROSITEiView protein in PROSITE
PS00446 RNA_POL_D_30KD, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiH2QT27_PANTR
AccessioniPrimary (citable) accession number: H2QT27
Secondary accession number(s): A0A2J8P0A6
Entry historyiIntegrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: October 10, 2018
This is version 54 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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