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Protein
Submitted name:

RBM43 isoform 1

Gene

RBM43

Organism
Pan troglodytes (Chimpanzee)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RBM43 isoform 1Imported
Submitted name:
RNA binding motif protein 43Imported
Gene namesi
Name:RBM43Imported
ORF Names:CK820_G0001230Imported
OrganismiPan troglodytes (Chimpanzee)Imported
Taxonomic identifieri9598 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaePan
Proteomesi
  • UP000002277 Componenti: Chromosome 2B

Expressioni

Gene expression databases

BgeeiENSPTRG00000012528 Expressed in 6 organ(s), highest expression level in liver

Interactioni

Protein-protein interaction databases

STRINGi9598.ENSPTRP00000021421

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini15 – 126RRMInterPro annotationAdd BLAST112

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili185 – 205Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG4012 Eukaryota
ENOG4112541 LUCA
GeneTreeiENSGT00390000007352
OMAiHIDIIGS
OrthoDBiEOG091G0CSW
TreeFamiTF335737

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR034463 RBM43
IPR000504 RRM_dom
PANTHERiPTHR15225:SF8 PTHR15225:SF8, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

H2QIT7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASVLNVKES KAPERTVVVA GLPVDLFSDQ LLAVLVKSHF QDIKNEGGDV
60 70 80 90 100
EDVIYPTRTK GVAYVIFKEK KVAENVIRQK KHWLARKTRH AELTVSHFGD
110 120 130 140 150
KIFSSVNAIL DLSVFGKEVT LETLVKDLKK KIPSLSFSPL KPSGRISVEG
160 170 180 190 200
SFLAVKRLRE SLLARACSLL EKDRNFTSEG RKWNRQNLQR NLQRSNNSLA
210 220 230 240 250
SVRTLVPETA RSGEMLVLDT DVFLYLKHKC GSYESTLKKF HILSQEKVDG
260 270 280 290 300
EITTICLKSI QVGSQPNNAK HVKELIEEWS HALYLKLRKE TFILEGKENR
310 320 330 340 350
EKRMIKRACE QLSSRYLEVL INLYRTHIDI IGSSSDTYLF KKGVMKLIGQ

KVS
Length:353
Mass (Da):40,128
Last modified:March 21, 2012 - v1
Checksum:iD9668C8282702A01
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2I3SL07A0A2I3SL07_PANTR
RBM43 isoform 3
RBM43 CK820_G0001230
68Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACZ04058390 Genomic DNA No translation available.
GABE01007579 mRNA Translation: JAA37160.1
NBAG03000211 Genomic DNA Translation: PNI85885.1
RefSeqiXP_525941.4, XM_525941.6

Genome annotation databases

EnsembliENSPTRT00000081960; ENSPTRP00000076389; ENSPTRG00000046668
GeneIDi470560

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACZ04058390 Genomic DNA No translation available.
GABE01007579 mRNA Translation: JAA37160.1
NBAG03000211 Genomic DNA Translation: PNI85885.1
RefSeqiXP_525941.4, XM_525941.6

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9598.ENSPTRP00000021421

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSPTRT00000081960; ENSPTRP00000076389; ENSPTRG00000046668
GeneIDi470560

Organism-specific databases

CTDi375287

Phylogenomic databases

eggNOGiKOG4012 Eukaryota
ENOG4112541 LUCA
GeneTreeiENSGT00390000007352
OMAiHIDIIGS
OrthoDBiEOG091G0CSW
TreeFamiTF335737

Gene expression databases

BgeeiENSPTRG00000012528 Expressed in 6 organ(s), highest expression level in liver

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR034463 RBM43
IPR000504 RRM_dom
PANTHERiPTHR15225:SF8 PTHR15225:SF8, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiH2QIT7_PANTR
AccessioniPrimary (citable) accession number: H2QIT7
Secondary accession number(s): A0A2J8PPE6
Entry historyiIntegrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: September 12, 2018
This is version 43 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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