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Entry version 53 (26 Feb 2020)
Sequence version 1 (21 Mar 2012)
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Protein
Submitted name:

PKHD1 ciliary IPT domain containing fibrocystin/polyductin

Gene

PKHD1

Organism
Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
PKHD1 ciliary IPT domain containing fibrocystin/polyductinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:PKHD1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9601 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaePongo
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001595 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 6

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei3859 – 3882HelicalSequence analysisAdd BLAST24

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 17Sequence analysisAdd BLAST17
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500356898418 – 4074Sequence analysisAdd BLAST4057

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
9601.ENSPPYP00000018684

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini322 – 485PA14InterPro annotationAdd BLAST164
Domaini1932 – 2053G8InterPro annotationAdd BLAST122
Domaini2747 – 2873G8InterPro annotationAdd BLAST127

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni3889 – 3925DisorderedSequence analysisAdd BLAST37

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi3908 – 3925PolyampholyteSequence analysisAdd BLAST18

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IEIF Eukaryota
ENOG410XQ01 LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000160697

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_000057_1_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
H2PJC2

Identification of Orthologs from Complete Genome Data

More...
OMAi
QSCAINV

TreeFam database of animal gene trees

More...
TreeFami
TF329582

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.160.20.10, 2 hits
2.60.40.10, 6 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR039448 Beta_helix
IPR019316 G8_domain
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
IPR002909 IPT_dom
IPR037524 PA14/GLEYA
IPR006626 PbH1
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
IPR028839 PKHD1

The PANTHER Classification System

More...
PANTHERi
PTHR46769:SF1 PTHR46769:SF1, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13229 Beta_helix, 2 hits
PF10162 G8, 2 hits
PF01833 TIG, 7 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01225 G8, 2 hits
SM00429 IPT, 6 hits
SM00710 PbH1, 10 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51126 SSF51126, 2 hits
SSF81296 SSF81296, 6 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51484 G8, 2 hits
PS51820 PA14, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

H2PJC2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTAWLISLMS IEVLLLAVPH LSLHIEPEEG SLAGGTWITV IFDGLELGVL
60 70 80 90 100
YPNNGSQLEI HLVNVNMVVP ALRSIPCDVF PVFLDLPVVT CRTRSVLSEA
110 120 130 140 150
HEGLYFLEAY FGGQLVSSPN PGPRDSCTFK FSKVQTPIVH HVYPPSGVPG
160 170 180 190 200
KRIHVYGWII TGRLETFDFD AEYIDSPVIL EAQGDKWVTP CSLINRQTGR
210 220 230 240 250
CYPIQEDHGL GTLQCRVEGD YIGSQNVSFS VFNKGKSMVH KKAWLISAKQ
260 270 280 290 300
DLFLYQTHSE ILSVFPETGS LGGRTDITIT GDFFDSSAQV TIAGIPCDIR
310 320 330 340 350
HVSPRKIECT TRAPGKDVRL TTPQPGNRGL LFEVGDAVEG LELTEATPGY
360 370 380 390 400
RWQIVPNASS PFGFWSQEGQ PFRARLSGFF VAPETNNYTF WIQADSQASL
410 420 430 440 450
HFSWSEEPRT KVKVASISVG TADWFDSWEQ NRDEGTWQQK TPKLELLGGA
460 470 480 490 500
KYYLEAEHHG IAPSRGMRIG VQIHNTWLNP DVVTTYLREK HQIRVQAQRL
510 520 530 540 550
PEVQVLNVSG RGNFFLTWDN VSSQPIPANA TAHLIQTNIE ELLAVKCKLE
560 570 580 590 600
PLWANILLRL GFEQGPEVSN SDGDLTSGTE PFCGRFSLCQ PRHLVLTPPA
610 620 630 640 650
AQKGYRLDQY THLCLAYKGH MNKILKMTVS FTIGFQNMVK NTTCDWSLTR
660 670 680 690 700
TSPESWQFHC TDLWETCVRC SGDLQPPPAN SPVLVHQIDL LPLAQETGLF
710 720 730 740 750
YVDEIIIADT NVTVSQADSG TARPGGNLVE SVSVVGSPPV YSVTSWLAGC
760 770 780 790 800
GTELPLITAR SVPTEGTEEG SGLVLVTTQR RQWTSPPLGG HFRIQLPNTV
810 820 830 840 850
ISDVPVQISA HHLHQLLQNN ANDFTSRYLN ASDFTVKEDL YTCYEHVWTL
860 870 880 890 900
SWSAQIGDLP NFIRVSDGNL TGVNPAAAMR VVYDGGVFLG PIFGDMLATA
910 920 930 940 950
NQHSQVVVRV NDVPAHCPGS CSFQYLQGST PCVHSVWYSI DGDINLMIYI
960 970 980 990 1000
TGTGFSGDSQ FLQVTVNKTN CKVIFSNQTN VVCQTDLLPV GMHRILMLVR
1010 1020 1030 1040 1050
PSGLAISATG EDLFLNVEPR LDMVEPSRAA DIGGLWATIR GSSLEGVSLI
1060 1070 1080 1090 1100
LFGSYSCAIN VTTSNSSRIQ CKVPPRGKDG HIVNVTVIRG DHFAVLPRAF
1110 1120 1130 1140 1150
TYVSSLNPVI VTLSRNTSNI AGGETLVIGV ARLVNYTDMD VEVHVQDALA
1160 1170 1180 1190 1200
PVHTQSAWGL EVALPPLPAG LHRISVSING VSIRSQGVDL HIQYLTEVFS
1210 1220 1230 1240 1250
IEPCCGSLLG GTILSISGIG FSRDPALVWV LVGNRSCDIV NLTEVSIWCE
1260 1270 1280 1290 1300
TLPAPQIPHA DTPTVPAAVE VWAGNRSFAH GPSPSLVGKG FTFMYEAAAT
1310 1320 1330 1340 1350
PVVTAMQGEI TNSSLSLHVG GSNLSNSVIL LGNLNCDVET QSFQGNASLS
1360 1370 1380 1390 1400
GCSIPLHSLE AGIYPLQVCQ KQMGFANMSV VPQQFAVMPR IMAIFPSQGS
1410 1420 1430 1440 1450
ACGGTILTVR GLLLNSRRRS VRVDLSGPFT CVILSLGDHT ILCQVSLEGD
1460 1470 1480 1490 1500
PLPGASFSLN VTVLVNGLTS ECQGNCALFI REEASPVMDA LSTNTSGSLT
1510 1520 1530 1540 1550
TVLIRGQRLA TTADEPMVFV DDQLPCNVTF FNASHVVCQT RDLAPGPHYL
1560 1570 1580 1590 1600
SVFYTRNGYA CSGNVSRHFY IMPQVFHYFP KNFSMHGGSL LTIEGTGLRG
1610 1620 1630 1640 1650
QNTTSVYIDQ QACLTVSIGA ELIRCIVPTG NGSVALEIEV DGLWRHIGVI
1660 1670 1680 1690 1700
GYNNAFTPEL ISISQSDDIL TFAVAQISGA ANIDIFIGTS PCMGVSGNHT
1710 1720 1730 1740 1750
VLQCVVPSLP AGEYHVRGYD CIRGWASSAL VFTSRVIITA VTENFGCLGG
1760 1770 1780 1790 1800
RLVHVFGAGF SPGNVSAAVC GAPCRVLANA TVSAFSCLVL PLDVSLAFLC
1810 1820 1830 1840 1850
GLKDEEDSCE AARHTYVQCD LTVAVGMEQL LESWPYLYIC EESSQCLFVP
1860 1870 1880 1890 1900
DHWAESMSPS FSGLFISPKV ERDEVLIYNS SCNITMETEA EMECETPNQP
1910 1920 1930 1940 1950
ITVKITEIRK RWGQNTQGNF SLQFCRRWSR THSWFPERLP QDGDNVTVEN
1960 1970 1980 1990 2000
GQLLLLDTNT SILNLLHIKG GKLIFMAPGP IELRAHAILV SDGGELRIGS
2010 2020 2030 2040 2050
EDKPFQGRAQ ITLYGSSYST PFFPYGVKFL AVRNGTLSLH GSLPEVIVTS
2060 2070 2080 2090 2100
LRATAHAQDT VLALEDAVDW HPGDEVVIIS GTGVEGAKPM EEIVTVETVQ
2110 2120 2130 2140 2150
DTDLYLKSPL RYSHNFTENW VAGEQHILKA TVALLSRSIT IQGNLTNERE
2160 2170 2180 2190 2200
KLLVSCQEAN APEGNLQHCL YSMSEKILGS RDMGARVIVQ SFPEEPSQVQ
2210 2220 2230 2240 2250
LKGVQFRVLG QAFHKHLSSL TLVGAMRESF IQGCTVRNSF SRGLSMCGTL
2260 2270 2280 2290 2300
GLKVDSNVFY NILGHALLVG TCMEMRYISW EAIHGRKDDW SGHGNIIRNN
2310 2320 2330 2340 2350
VIIRVSGAEG LSNPEMLTPS GIYIRSPTNV IEGNRVCGAG YGYFFHLMTN
2360 2370 2380 2390 2400
KTSQAPLLSF TQNIAHSCTR YGLFVYPKFQ PPWDNVTGTT LFQSFTVWES
2410 2420 2430 2440 2450
AGGAQIFRSS NLRLKNFQVY SCRDFGIDIL ESDANTSVTD SLLLGHFAHK
2460 2470 2480 2490 2500
GSLCMSSGIK TPKRWELMVS NTTFVNFDLI NCVAIRTCSD CSQGQGGFTV
2510 2520 2530 2540 2550
KTSQLKFTNS SNLVAFPFPH AAILEDLDGS LSGKNRSHIL ASMETLSPSC
2560 2570 2580 2590 2600
LVNASFGRVV HGSACGRGVL FHRMSIGLAH TPEVYYDLTM TDSRNKTTTV
2610 2620 2630 2640 2650
NYVCDTLSNP HGWMALLVDQ ETYSLQSENL WINRSLQYSA TFDNFAPGNY
2660 2670 2680 2690 2700
LLLVHTDLPP YPDILLRCGS RVGLSFPFLP SPGQNQGCDW FFNSQLRQLT
2710 2720 2730 2740 2750
YLVSGEGQVQ VILRVKEGMP PTISASTSAP ESALKWSLPE TWQGVEEGWG
2760 2770 2780 2790 2800
GYNNTIPGPG DDVLILPNRT VLVDTDLPFF KGLYVMGTLD FPVDRSNVLS
2810 2820 2830 2840 2850
VACMVIAGGE LKVGTLENPL EKEQKLLILL RASEGVFCDR MNGIHIDPGT
2860 2870 2880 2890 2900
IGVYGKVQLY SAYPKNSWTH LGADIASGNE RIIVEDAVDW RPHDKIVLSS
2910 2920 2930 2940 2950
SSYEPHEAEV LTVKEVKGHH VRIYEQLKHR HIGSVHVTED GRHIRLAAEV
2960 2970 2980 2990 3000
GLLTRNIQIQ PDVSCRGRLF VGSFRKSSGE EFSGVLQLLN VEIQNFGSPL
3010 3020 3030 3040 3050
YSSVEFSNVS AGSWIISSTL HQSCGGGIHA AASHGVLLND NIVFGTTGHG
3060 3070 3080 3090 3100
IDLEGQAYTV TNNLVVLMTQ PAWSTIWVAG IKVNQVKDIN LHGNVVAGSE
3110 3120 3130 3140 3150
RLGFHIRGHK CSSCELLWSD NVAHSNLHGL HLYKESGLDN CTRISGFLAF
3160 3170 3180 3190 3200
KNFDYGAMLH VENSVEIENI TLVDNTIGLL AVVYVFSAPQ NSIKKVQIVL
3210 3220 3230 3240 3250
RNSVIVATSS SFDCIQDKVK PHSANLTSTD RAPSNPRGGR VGILWPVFTS
3260 3270 3280 3290 3300
EPNQWPQEPW HKVRNDRSIS GIMKFQDVTF SSFVKSCYNN DLDVCILPNA
3310 3320 3330 3340 3350
ENSGIMHPIT AERTRMLKIK DKNKFYFPSL QPRKDLGKVV CPELDCVSPR
3360 3370 3380 3390 3400
KYLFKDLDGR ALGLPPPVSV FPKTEAEWTA SFFNAGTFRE EQKCTYRFLM
3410 3420 3430 3440 3450
QGFICKQTDQ VVLILDSTDA IWAIQKLYPV VSVTSGFVDV FSSVNANIPC
3460 3470 3480 3490 3500
STSGSVSTFY SILPTRQISK VCFMDQTPQV LRFFLLGNKS TSKLLLAVFY
3510 3520 3530 3540 3550
HELQSPHVFL GESFIPPTLV QSASLLLNES IGANYFNIMD NLLYVVLQGE
3560 3570 3580 3590 3600
EPIEIRSGVS IHLALTVMVS VLEKGWEIVI LERLTNFLQI GRNQIRFIHE
3610 3620 3630 3640 3650
MPGHEETLKA IADNRAKRKR NCPTVTCTSH YRRVGQRRPL MMEMNSYRAS
3660 3670 3680 3690 3700
PPTTVETISK VIVIEIGDSP TVRSTGTISS LSSNKLQNLA HQVITAQQTG
3710 3720 3730 3740 3750
VLENVLNMTI GALLVTQSKG VIGYGNTSSF KTGNLIYIRP YALSILVQPS
3760 3770 3780 3790 3800
DGEVGNELPV QPQLVFLDGQ NRRVESLGPP SEPWTISASL EGASDSVLKG
3810 3820 3830 3840 3850
CTQAETQDGY VSFYNLAVLI SGSNWHFIFT VTSPPGVNFT ARSKPFAVLP
3860 3870 3880 3890 3900
VTRKEKSTII LAASLSSVAS WLALSCLVCC WLKRSKSRKT KPEEIPESQT
3910 3920 3930 3940 3950
NNQNNHIHIS SKRRESQGPK KEDTVVGEDM RMRVMLGKVN QSPHQLMNGV
3960 3970 3980 3990 4000
SRRKVSRHIV REEEAAVPAP GTTGITSHGH ICAPGAPAQQ MYLQETGNWK
4010 4020 4030 4040 4050
EGQEQLLRYQ LAGQDQLLLL CPDFRQERQQ LPGQSRLSKQ SGSLGLSQEK
4060 4070
KASCGATEAF CLHSVHPETI QEQL
Length:4,074
Mass (Da):446,654
Last modified:March 21, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i47C9EFE6005DA10B
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
ABGA01019456 Genomic DNA No translation available.
ABGA01019457 Genomic DNA No translation available.
ABGA01151708 Genomic DNA No translation available.
ABGA01151709 Genomic DNA No translation available.
ABGA01183336 Genomic DNA No translation available.
ABGA01183337 Genomic DNA No translation available.
ABGA01183338 Genomic DNA No translation available.
ABGA01183339 Genomic DNA No translation available.
ABGA01183340 Genomic DNA No translation available.
ABGA01183341 Genomic DNA No translation available.

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSPPYT00000019425; ENSPPYP00000018684; ENSPPYG00000016702

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ABGA01019456 Genomic DNA No translation available.
ABGA01019457 Genomic DNA No translation available.
ABGA01151708 Genomic DNA No translation available.
ABGA01151709 Genomic DNA No translation available.
ABGA01183336 Genomic DNA No translation available.
ABGA01183337 Genomic DNA No translation available.
ABGA01183338 Genomic DNA No translation available.
ABGA01183339 Genomic DNA No translation available.
ABGA01183340 Genomic DNA No translation available.
ABGA01183341 Genomic DNA No translation available.

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi9601.ENSPPYP00000018684

Genome annotation databases

EnsembliENSPPYT00000019425; ENSPPYP00000018684; ENSPPYG00000016702

Phylogenomic databases

eggNOGiENOG410IEIF Eukaryota
ENOG410XQ01 LUCA
GeneTreeiENSGT00940000160697
HOGENOMiCLU_000057_1_0_1
InParanoidiH2PJC2
OMAiQSCAINV
TreeFamiTF329582

Family and domain databases

Gene3Di2.160.20.10, 2 hits
2.60.40.10, 6 hits
InterProiView protein in InterPro
IPR039448 Beta_helix
IPR019316 G8_domain
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
IPR002909 IPT_dom
IPR037524 PA14/GLEYA
IPR006626 PbH1
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
IPR028839 PKHD1
PANTHERiPTHR46769:SF1 PTHR46769:SF1, 1 hit
PfamiView protein in Pfam
PF13229 Beta_helix, 2 hits
PF10162 G8, 2 hits
PF01833 TIG, 7 hits
SMARTiView protein in SMART
SM01225 G8, 2 hits
SM00429 IPT, 6 hits
SM00710 PbH1, 10 hits
SUPFAMiSSF51126 SSF51126, 2 hits
SSF81296 SSF81296, 6 hits
PROSITEiView protein in PROSITE
PS51484 G8, 2 hits
PS51820 PA14, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiH2PJC2_PONAB
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: H2PJC2
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: February 26, 2020
This is version 53 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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