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Protein
Submitted name:

PDLIM1 isoform 1

Gene

PDLIM1

Organism
Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PDLIM1 isoform 1Imported
Submitted name:
PDZ and LIM domain 1Imported
Gene namesi
Name:PDLIM1Imported
ORF Names:CR201_G0038021Imported
OrganismiPongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)Imported
Taxonomic identifieri9601 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaePongo
Proteomesi
  • UP000001595 Componenti: Chromosome 10

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi9601.ENSPPYP00000002906

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 85PDZInterPro annotationAdd BLAST74
Domaini258 – 317LIM zinc-bindingInterPro annotationAdd BLAST60

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1703 Eukaryota
ENOG410XRD4 LUCA
GeneTreeiENSGT00590000082980
InParanoidiH2NB36
OMAiATANLCI
OrthoDBiEOG091G0A6C
TreeFamiTF106408

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR028537 PDLIM1
IPR001478 PDZ
IPR036034 PDZ_sf
IPR006643 Zasp-like_motif
IPR001781 Znf_LIM
PANTHERiPTHR24214:SF5 PTHR24214:SF5, 1 hit
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00228 PDZ, 1 hit
SM00735 ZM, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit
PS50106 PDZ, 1 hit

Sequencei

Sequence statusi: Complete.

H2NB36-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTTQQIVLQG PGPWGFRLVG GKDFEQPLAI SRVTPGSKAA LANLCIGDVI
60 70 80 90 100
TAIDGENTSN MTHLEAQNRI KGCTDNLTLT VARSEHKVWS PLVTEEGKRH
110 120 130 140 150
PYRMNLASEP QEVLHIGSAH NRSAMPFTAS PASSTTARVI TNQYNNPAGL
160 170 180 190 200
YSSENISNFN NALESKTAAS GVEANSRPLD HAQPPSSLVI DKESEVYKML
210 220 230 240 250
QEKQELNEPP KQSTSFLVLQ EILESEEKGD PNKPSGFRSV KAPVTKVAAS
260 270 280 290 300
IGNAQKLPMC DKCGTGIVGV FVKLRDRHRH PECYVCTDCG TNLKQKGHFF
310 320
VEDQIYCEKH ARERVTPPEG YEVVTVFPK
Length:329
Mass (Da):36,084
Last modified:March 21, 2012 - v1
Checksum:i2C478E5BD3AF155B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ABGA01149812 Genomic DNA No translation available.
ABGA01149813 Genomic DNA No translation available.
ABGA01149814 Genomic DNA No translation available.
ABGA01149815 Genomic DNA No translation available.
ABGA01149816 Genomic DNA No translation available.
ABGA01149817 Genomic DNA No translation available.
ABGA01149818 Genomic DNA No translation available.
NDHI03003280 Genomic DNA Translation: PNJ89533.1
RefSeqiXP_002821059.1, XM_002821013.3

Genome annotation databases

EnsembliENSPPYT00000003008; ENSPPYP00000002906; ENSPPYG00000002507
GeneIDi100450138
KEGGipon:100450138

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ABGA01149812 Genomic DNA No translation available.
ABGA01149813 Genomic DNA No translation available.
ABGA01149814 Genomic DNA No translation available.
ABGA01149815 Genomic DNA No translation available.
ABGA01149816 Genomic DNA No translation available.
ABGA01149817 Genomic DNA No translation available.
ABGA01149818 Genomic DNA No translation available.
NDHI03003280 Genomic DNA Translation: PNJ89533.1
RefSeqiXP_002821059.1, XM_002821013.3

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9601.ENSPPYP00000002906

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSPPYT00000003008; ENSPPYP00000002906; ENSPPYG00000002507
GeneIDi100450138
KEGGipon:100450138

Organism-specific databases

CTDi9124

Phylogenomic databases

eggNOGiKOG1703 Eukaryota
ENOG410XRD4 LUCA
GeneTreeiENSGT00590000082980
InParanoidiH2NB36
OMAiATANLCI
OrthoDBiEOG091G0A6C
TreeFamiTF106408

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR028537 PDLIM1
IPR001478 PDZ
IPR036034 PDZ_sf
IPR006643 Zasp-like_motif
IPR001781 Znf_LIM
PANTHERiPTHR24214:SF5 PTHR24214:SF5, 1 hit
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00228 PDZ, 1 hit
SM00735 ZM, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit
PS50106 PDZ, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiH2NB36_PONAB
AccessioniPrimary (citable) accession number: H2NB36
Secondary accession number(s): A0A2J8Y5M5
Entry historyiIntegrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: May 23, 2018
This is version 47 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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