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Protein
Submitted name:

T-box transcription factor Tb

Gene

tbxt

Organism
Oryzias latipes (Japanese rice fish) (Japanese killifish)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
T-box transcription factor TbImported
Gene namesi
Name:tbxtImported
OrganismiOryzias latipes (Japanese rice fish) (Japanese killifish)Imported
Taxonomic identifieri8090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiNeoteleosteiAcanthomorphataOvalentariaAtherinomorphaeBeloniformesAdrianichthyidaeOryziinaeOryzias
Proteomesi
  • UP000001038 Componenti: Chromosome 15

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi8090.ENSORLP00000014116

Family & Domainsi

Phylogenomic databases

eggNOGiKOG3585 Eukaryota
ENOG410XSTS LUCA
GeneTreeiENSGT00900000140847
InParanoidiH2M6L9
KOiK10172
OMAiAPSCVYI
OrthoDBiEOG091G05OC
TreeFamiTF106341

Family and domain databases

CDDicd00182 TBOX, 1 hit
Gene3Di2.60.40.820, 1 hit
InterProiView protein in InterPro
IPR008967 p53-like_TF_DNA-bd
IPR036960 T-box_sf
IPR002070 TF_Brachyury
IPR001699 TF_T-box
IPR018186 TF_T-box_CS
PANTHERiPTHR11267 PTHR11267, 1 hit
PfamiView protein in Pfam
PF00907 T-box, 1 hit
PRINTSiPR00938 BRACHYURY
PR00937 TBOX
SMARTiView protein in SMART
SM00425 TBOX, 1 hit
SUPFAMiSSF49417 SSF49417, 1 hit
PROSITEiView protein in PROSITE
PS01283 TBOX_1, 1 hit
PS01264 TBOX_2, 1 hit
PS50252 TBOX_3, 1 hit

Sequencei

Sequence statusi: Complete.

H2M6L9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATGARECPS KAVQYRVDHL LSAVESELQA GSEKGDPTER ELRVSLEEST
60 70 80 90 100
LWQKFKELTN EMIVTKNGRR MFPVLKVSAS GLDPNAMYSF LLDFVSADNH
110 120 130 140 150
RWKYVNGEWV PGGKPEPQTP SCVYIHPDSP NFGAHWMKAP VSFSKVKLTN
160 170 180 190 200
KLNGGGQIML NSLHKYEPRI HIVRVGGPRR MITSHSFPET QFIAVTAYQN
210 220 230 240 250
EEITALKIKY NPFAKAFLDA KERSDHRDTR EDAPENHQSG YSQSGSWFIP
260 270 280 290 300
GSGPLCPPAS PHSQFGSPIS LSPSHGCERY STLRNQRSAP YSSSPYAHRT
310 320 330 340 350
GSPTDYSENA SSCLPMLSSH ENWSSLQMPA HSSPSGAGSS QYTSLWSVST
360 370 380 390 400
PPLTSVPQNG GLNGCFGSQF LRGSSSHYAG LVHSATAPPA GSPLYDGSSA
410 420
SELHDAAQFD GSPHGRVPSA WTSVAPPSL
Length:429
Mass (Da):46,679
Last modified:March 21, 2012 - v1
Checksum:i1501300795E4B733
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BAAF04029265 Genomic DNA No translation available.
RefSeqiXP_004077500.1, XM_004077452.2

Genome annotation databases

EnsembliENSORLT00000014117; ENSORLP00000014116; ENSORLG00000011262
GeneIDi101161917
KEGGiola:101161917

Similar proteinsi

Entry informationi

Entry nameiH2M6L9_ORYLA
AccessioniPrimary (citable) accession number: H2M6L9
Entry historyiIntegrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: June 20, 2018
This is version 50 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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