UniProtKB - H1A5Y8 (H1A5Y8_DANRE)
Protein
Submitted name:
Leucine-rich repeat (in FLII)-interacting protein 1a
Gene
lrrfip1a
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Functioni
GO - Molecular functioni
- DNA-binding transcription factor activity, RNA polymerase II-specific Source: GO_Central
- RNA polymerase II cis-regulatory region sequence-specific DNA binding Source: GO_Central
GO - Biological processi
- regulation of transcription by RNA polymerase II Source: GO_Central
Names & Taxonomyi
Protein namesi | Submitted name: Leucine-rich repeat (in FLII)-interacting protein 1aImported |
Gene namesi | Name:lrrfip1aImported |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Proteomesi |
|
Organism-specific databases
ZFINi | ZDB-GENE-030131-99, lrrfip1a |
Expressioni
Gene expression databases
Bgeei | ENSDARG00000030012, Expressed in swim bladder and 40 other tissues |
ExpressionAtlasi | H1A5Y8, baseline and differential |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 20 | DisorderedSequence analysisAdd BLAST | 20 | |
Regioni | 52 – 122 | DisorderedSequence analysisAdd BLAST | 71 | |
Regioni | 290 – 313 | DisorderedSequence analysisAdd BLAST | 24 | |
Regioni | 327 – 415 | DisorderedSequence analysisAdd BLAST | 89 | |
Regioni | 427 – 529 | DisorderedSequence analysisAdd BLAST | 103 | |
Regioni | 956 – 987 | DisorderedSequence analysisAdd BLAST | 32 | |
Regioni | 999 – 1168 | DisorderedSequence analysisAdd BLAST | 170 |
Coiled coil
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Coiled coili | 133 – 153 | Sequence analysisAdd BLAST | 21 | |
Coiled coili | 161 – 199 | Sequence analysisAdd BLAST | 39 | |
Coiled coili | 203 – 226 | Sequence analysisAdd BLAST | 24 | |
Coiled coili | 234 – 278 | Sequence analysisAdd BLAST | 45 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 52 – 89 | PolyampholyteSequence analysisAdd BLAST | 38 | |
Compositional biasi | 90 – 122 | PolarSequence analysisAdd BLAST | 33 | |
Compositional biasi | 299 – 313 | PolarSequence analysisAdd BLAST | 15 | |
Compositional biasi | 338 – 360 | PolarSequence analysisAdd BLAST | 23 | |
Compositional biasi | 394 – 415 | PolyampholyteSequence analysisAdd BLAST | 22 | |
Compositional biasi | 453 – 483 | PolyampholyteSequence analysisAdd BLAST | 31 | |
Compositional biasi | 495 – 509 | BasicSequence analysisAdd BLAST | 15 | |
Compositional biasi | 960 – 977 | AcidicSequence analysisAdd BLAST | 18 | |
Compositional biasi | 1000 – 1014 | PolarSequence analysisAdd BLAST | 15 | |
Compositional biasi | 1017 – 1049 | PolyampholyteSequence analysisAdd BLAST | 33 | |
Compositional biasi | 1063 – 1077 | PolarSequence analysisAdd BLAST | 15 | |
Compositional biasi | 1078 – 1092 | PolyampholyteSequence analysisAdd BLAST | 15 | |
Compositional biasi | 1099 – 1115 | PolyampholyteSequence analysisAdd BLAST | 17 | |
Compositional biasi | 1135 – 1168 | PolyampholyteSequence analysisAdd BLAST | 34 |
Sequence similaritiesi
Belongs to the LRRFIP family.ARBA annotation
Keywords - Domaini
Coiled coilSequence analysisARBA annotationPhylogenomic databases
GeneTreei | ENSGT00530000063564 |
OrthoDBi | 1434475at2759 |
Family and domain databases
InterProi | View protein in InterPro IPR019139, LRRFIP1/2 |
PANTHERi | PTHR19212, PTHR19212, 1 hit |
Pfami | View protein in Pfam PF09738, LRRFIP, 2 hits |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 9 potential isoforms that are computationally mapped.Show allAlign All
H1A5Y8-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MGSQGPGRKR TPSKNGLTAE EDALNVIAKE AEARLAAKRA ARAEAREIRM
60 70 80 90 100
KELERQQKEV SDDEERMSVG SRSNVRADDR LERDYLEKGS SRASTISGTT
110 120 130 140 150
LTSLGGTSSR RGSGDTSISA DTEASIREIK DSLLEVEEKY RKAMVSNAQL
160 170 180 190 200
DNEKTNMMYE VDTLRDSLME LEEMLFETRR ELEEKIKDLE REKHAHSILQ
210 220 230 240 250
FQFSELKETL KQSEELLSDI RQLRLKQDGF VREISDLQET IEWKNKKIGA
260 270 280 290 300
LERQKEFSDA IRNERDELRD EVVQLKDVLK KHGIVLGPDL VTNGETGDEV
310 320 330 340 350
GNADPNSQTA SAEIREGSSV LGIHQLKHKD QEQKYLDDEV QGNQQSSNAL
360 370 380 390 400
FSSTNPPLEA NDNGVLGDSV VPGVGQHENR TEEPLSSVGD EEVTATAPKE
410 420 430 440 450
EVKSEEHELK DLKNNAVELK RKVCMGEHLE TEQQESKCVN SSQEIKEEAP
460 470 480 490 500
LDSVSNTMHD ETDKPDEAVL DEQCKEEPVE SSQMEEPPKT QVTSASNKKK
510 520 530 540 550
KKKKKNKQKQ KQSDKQESGT AMEVLNEDNS NQIVESVLEG TNEEPLANAV
560 570 580 590 600
SETTMNADLP ASSCSDITTK GQDRIEVAAT NTVVDDVHDG VQLVTDEVDS
610 620 630 640 650
AEISKSISNF DCSESSNDIL SEGPSNNIIS NTTDDPSNNI ICNTADDLSN
660 670 680 690 700
NIISDTADDL SNNIISDTAD DLSNNIISDT ADDLSNDIIT NTSVDLSSDI
710 720 730 740 750
ITNTPDDLSN DSITNTADDP SNIIISDPAT IIEERAEDSA NSSLEPAITC
760 770 780 790 800
SELKSSEMEA SCHEPSVGPI TSENNKTLLV DAKEEKVDLE CDEEPSPQNV
810 820 830 840 850
DVDRICDPED QEASAQFDFH VMENVENKAE LMMQEQTVDP LMDSQLQDSV
860 870 880 890 900
QSEVGKEKEQ GELDKENLEA HKEEVFAGSK VDYSPFIETQ VQVVQDDNLF
910 920 930 940 950
TNEANQESVE PSDQNSMVEK VEEEISIQGL VTPDGQLPKD DNDLLIELDV
960 970 980 990 1000
VGLVHKQEDA DEEDEGESFD FDETDLEVSS DGPLKKSLDK LKEEVTLLKE
1010 1020 1030 1040 1050
NVQEASQENQ SNVIDEDLTQ EDEHLQLADQ ESKPHEQKDD GHDTENMQSR
1060 1070 1080 1090 1100
DVEGCLTEKS LINCDVSPLS QQHNTSANKE DTFEEHQKAL VDVPVSERVN
1110 1120 1130 1140 1150
LMSDKEKREV GQEISSSIPH KKQASVISGD PKLEKEITGN NKEDESRESR
1160
KSAKGKGKGK GKEDCKMS
Computationally mapped potential isoform sequencesi
There are 9 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketF1QGV4 | F1QGV4_DANRE | Leucine-rich repeat (in FLII)-inter... | lrrfip1a | 1,177 | Annotation score: | ||
F1QDT9 | F1QDT9_DANRE | Leucine-rich repeat (in FLII)-inter... | lrrfip1a | 487 | Annotation score: | ||
G1K2J1 | G1K2J1_DANRE | Leucine-rich repeat (in FLII)-inter... | lrrfip1a | 244 | Annotation score: | ||
F1QI65 | F1QI65_DANRE | Leucine-rich repeat (in FLII)-inter... | lrrfip1a | 446 | Annotation score: | ||
A0A0R4IBX6 | A0A0R4IBX6_DANRE | Leucine-rich repeat (in FLII)-inter... | lrrfip1a | 178 | Annotation score: | ||
A0A0R4IL11 | A0A0R4IL11_DANRE | Leucine-rich repeat (in FLII)-inter... | lrrfip1a | 539 | Annotation score: | ||
H0WEN2 | H0WEN2_DANRE | Leucine-rich repeat (in FLII)-inter... | lrrfip1a | 203 | Annotation score: | ||
A0A0R4IUM2 | A0A0R4IUM2_DANRE | Leucine-rich repeat (in FLII)-inter... | lrrfip1a | 118 | Annotation score: | ||
A0A0R4IXG0 | A0A0R4IXG0_DANRE | Leucine-rich repeat (in FLII)-inter... | lrrfip1a | 82 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CR545476 Genomic DNA No translation available. CT867952 Genomic DNA No translation available. |
RefSeqi | XP_005167693.1, XM_005167636.2 |
Genome annotation databases
Ensembli | ENSDART00000101577; ENSDARP00000092350; ENSDARG00000030012 |
GeneIDi | 407677 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CR545476 Genomic DNA No translation available. CT867952 Genomic DNA No translation available. |
RefSeqi | XP_005167693.1, XM_005167636.2 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
Ensembli | ENSDART00000101577; ENSDARP00000092350; ENSDARG00000030012 |
GeneIDi | 407677 |
Organism-specific databases
CTDi | 407677 |
ZFINi | ZDB-GENE-030131-99, lrrfip1a |
Phylogenomic databases
GeneTreei | ENSGT00530000063564 |
OrthoDBi | 1434475at2759 |
Gene expression databases
Bgeei | ENSDARG00000030012, Expressed in swim bladder and 40 other tissues |
ExpressionAtlasi | H1A5Y8, baseline and differential |
Family and domain databases
InterProi | View protein in InterPro IPR019139, LRRFIP1/2 |
PANTHERi | PTHR19212, PTHR19212, 1 hit |
Pfami | View protein in Pfam PF09738, LRRFIP, 2 hits |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | H1A5Y8_DANRE | |
Accessioni | H1A5Y8Primary (citable) accession number: H1A5Y8 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | February 22, 2012 |
Last sequence update: | January 20, 2016 | |
Last modified: | April 7, 2021 | |
This is version 55 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |