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Protein
Submitted name:

AT-rich interactive domain-containing protein 1B

Gene

ARID1B

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
AT-rich interactive domain-containing protein 1BImported
Gene namesi
Name:ARID1BImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

EuPathDBiHostDB:ENSG00000049618.21
HGNCiHGNC:18040 ARID1B

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000049618

PTM / Processingi

Proteomic databases

EPDiH0Y7H8
MaxQBiH0Y7H8
PeptideAtlasiH0Y7H8
PRIDEiH0Y7H8

Expressioni

Gene expression databases

BgeeiENSG00000049618 Expressed in 217 organ(s), highest expression level in female reproductive system
ExpressionAtlasiH0Y7H8 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliH0Y7H8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini575 – 666ARIDInterPro annotationAdd BLAST92

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili1247 – 1267Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00550000074575

Family and domain databases

Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR038040 ARID1B
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR021906 BAF250/Osa
IPR033388 BAF250_C
PANTHERiPTHR12656 PTHR12656, 2 hits
PTHR12656:SF11 PTHR12656:SF11, 2 hits
PfamiView protein in Pfam
PF01388 ARID, 1 hit
PF12031 BAF250_C, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 16 potential isoforms that are computationally mapped.Show allAlign All

H0Y7H8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
SPGTPGPTMG RSQGSPMDPM VMKRPQLYGM GSNPHSQPQQ SSPYPGGSYG
60 70 80 90 100
PPGPQRYPIG IQGRTPGAMA GMQYPQQQMP PQYGQQGVSG YCQQGQQPYY
110 120 130 140 150
SQQPQPPHLP PQAQYLPSQS QQRYQPQQDM SQEGYGTRSQ PPLAPGKPNH
160 170 180 190 200
EDLNLIQQER PSSLPDLSGS IDDLPTGTEA TLSSAVSASG STSSQGDQSN
210 220 230 240 250
PAQSPFSPHA SPHLSSIPGG PSPSPVGSPV GSNQSRSGPI SPASIPGFMA
260 270 280 290 300
GTQRNPQMAQ YGPQQTGPSM SPHPSPGGQM HAGISSFQQS NSSGTYGPQM
310 320 330 340 350
SQYGPQGNYS RPPAYSGVPS ASYSGPGPGM GISANNQMHG QGPSQPCGAV
360 370 380 390 400
PLGRMPSAGM QNRPFPGNMS SMTPSSPGMS QQGGPGMGPP MPTVNRKAQE
410 420 430 440 450
AAAAVMQAAA NSAQSRQGSF PGMNQSGLMA SSSPYSQPMN NSSSLMNTQA
460 470 480 490 500
PPYSMAPAMV NSSAASVGLA DMMSPGESKL PLPLKADGKE EGTPQPESKS
510 520 530 540 550
KDSYSSQGIS QPPTPGNLPV PSPMSPSSAS ISSFHGDESD SISSPGWPKT
560 570 580 590 600
PSSPKSSSST TTGEKITKVY ELGNEPERKL WVDRYLTFME ERGSPVSSLP
610 620 630 640 650
AVGKKPLDLF RLYVCVKEIG GLAQVNKNKK WRELATNLNV GTSSSAASSL
660 670 680 690 700
KKQYIQYLFA FECKIERGEE PPPEVFSTGD TKKQPKLQPP SPANSGSLQG
710 720 730 740 750
PQTPQSTGSN SMAEVPGDLK PPTPASTPHG QMTPMQGGRS STISVHDPFS
760 770 780 790 800
DVSDSSFPKR NSMTPNAPYQ QGMSMPDVMG RMPYEPNKDP FGGMRKVPGS
810 820 830 840 850
SEPFMTQGQM PNSSMQDMYN QSPSGAMSNL GMGQRQQFPY GASYDRRHEP
860 870 880 890 900
YGQQYPGQGP PSGQPPYGGH QPGLYPQQPN YKRHMDGMYG PPAKRHEGDM
910 920 930 940 950
YNMQYSSQQQ EMYNQYGGSY SGPDRRPIQG QYPYPYSRER MQGPGQIQTH
960 970 980 990 1000
GIPPQMMGGP LQSSSSEGPQ QNMWAARNDM PYPYQNRQGP GGPTQAPPYP
1010 1020 1030 1040 1050
GMNRTDDMMV PDQRINHESQ WPSHVSQRQP YMSSSASMQP ITRPPQPSYQ
1060 1070 1080 1090 1100
TPPSLPNHIS RAPSPASFQR SLENRMSPSK SPFLPSMKMQ KVMPTVPTSQ
1110 1120 1130 1140 1150
VTGPPPQPPP IRREITFPPG SVEASQPVLK QRRKITSKDI VTPEAWRVMM
1160 1170 1180 1190 1200
SLKSGLLAES TWALDTINIL LYDDSTVATF NLSQLSGFLE LLVEYFRKCL
1210 1220 1230 1240 1250
IDIFGILMEY EVGDPSQKAL DHNAARKDDS QSLADDSGKE EEDAECIDDD
1260 1270 1280 1290 1300
EEDEEDEEED SEKTESDEKS SIALTAPDAA ADPKEKPKQA SKFDKLPIKI
1310 1320 1330 1340 1350
VKKNNLFVVD RSDKLGRVQE FNSGLLHWQL GGGDTTEHIQ THFESKMEIP
1360 1370 1380 1390 1400
PRRRPPPPLS SAGRKKEQEG KGDSEEQQEK SIIATIDDVL SARPGALPED
1410 1420 1430 1440 1450
ANPGPQTESS KFPFGIQQAK SHRNIKLLED EPRSRDETPL CTIAHWQDSL
1460 1470 1480 1490 1500
AKRCICVSNI VRSLSFVPGN DAEMSKHPGL VLILGKLILL HHEHPERKRA
1510 1520 1530 1540 1550
PQTYEKEEDE DKGVACSKDE WWWDCLEVLR DNTLVTLANI SGQLDLSAYT
1560 1570 1580 1590 1600
ESICLPILDG LLHWMVCPSA EAQDPFPTVG PNSVLSPQRL VLETLCKLSI
1610 1620 1630 1640 1650
QDNNVDLILA TPPFSRQEKF YATLVRYVGD RKNPVCREMS MALLSNLAQG
1660 1670 1680 1690 1700
DALAARAIAV QKGSIGNLIS FLEDGVTMAQ YQQSQHNLMH MQPPPLEPPS
1710 1720 1730 1740 1750
VDMMCRAAKA LLAMARVDEN RSEFLLHEGR LLDISISAVL NSLVASVICD

VLFQIGQL
Length:1,758
Mass (Da):190,696
Last modified:February 22, 2012 - v1
Checksum:i622F715187117CC8
GO

Computationally mapped potential isoform sequencesi

There are 16 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q8NFD5ARI1B_HUMAN
AT-rich interactive domain-containi...
ARID1B BAF250B, DAN15, KIAA1235, OSA2
2,236Annotation score:
A0A1B0GVK1A0A1B0GVK1_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,539Annotation score:
A0A1B0GWJ2A0A1B0GWJ2_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,479Annotation score:
A0A1B0GTJ8A0A1B0GTJ8_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,495Annotation score:
A0A1B0GV63A0A1B0GV63_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,349Annotation score:
H0Y2R3H0Y2R3_HUMAN
AT-rich interactive domain-containi...
ARID1B
727Annotation score:
H0Y3S9H0Y3S9_HUMAN
AT-rich interactive domain-containi...
ARID1B
273Annotation score:
A0A1B0GTI6A0A1B0GTI6_HUMAN
AT-rich interactive domain-containi...
ARID1B
312Annotation score:
A0A1B0GU09A0A1B0GU09_HUMAN
AT-rich interactive domain-containi...
ARID1B
186Annotation score:
A0A1B0GU65A0A1B0GU65_HUMAN
AT-rich interactive domain-containi...
ARID1B
191Annotation score:
There are more potential isoformsShow all

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL049820 Genomic DNA No translation available.
AL136091 Genomic DNA No translation available.
AL162578 Genomic DNA No translation available.
AL355297 Genomic DNA No translation available.
AL591545 Genomic DNA No translation available.
KF458328 Genomic DNA No translation available.
KF458335 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000414678; ENSP00000412835; ENSG00000049618
UCSCiuc063smd.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL049820 Genomic DNA No translation available.
AL136091 Genomic DNA No translation available.
AL162578 Genomic DNA No translation available.
AL355297 Genomic DNA No translation available.
AL591545 Genomic DNA No translation available.
KF458328 Genomic DNA No translation available.
KF458335 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliH0Y7H8
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

EPDiH0Y7H8
MaxQBiH0Y7H8
PeptideAtlasiH0Y7H8
PRIDEiH0Y7H8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000414678; ENSP00000412835; ENSG00000049618
UCSCiuc063smd.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000049618.21
HGNCiHGNC:18040 ARID1B
OpenTargetsiENSG00000049618
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00550000074575

Miscellaneous databases

ChiTaRSiARID1B human

Gene expression databases

BgeeiENSG00000049618 Expressed in 217 organ(s), highest expression level in female reproductive system
ExpressionAtlasiH0Y7H8 baseline and differential

Family and domain databases

Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR038040 ARID1B
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR021906 BAF250/Osa
IPR033388 BAF250_C
PANTHERiPTHR12656 PTHR12656, 2 hits
PTHR12656:SF11 PTHR12656:SF11, 2 hits
PfamiView protein in Pfam
PF01388 ARID, 1 hit
PF12031 BAF250_C, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiH0Y7H8_HUMAN
AccessioniPrimary (citable) accession number: H0Y7H8
Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: September 12, 2018
This is version 55 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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