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Protein
Submitted name:

Splicing factor 45

Gene

RBM17

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Splicing factor 45Imported
Gene namesi
Name:RBM17Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 10

Organism-specific databases

EuPathDBiHostDB:ENSG00000134453.15
HGNCiHGNC:16944 RBM17

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000134453

PTM / Processingi

Proteomic databases

EPDiH0Y6J6
MaxQBiH0Y6J6
PeptideAtlasiH0Y6J6
PRIDEiH0Y6J6

Expressioni

Gene expression databases

BgeeiENSG00000134453 Expressed in 200 organ(s), highest expression level in small intestine Peyer's patch
ExpressionAtlasiH0Y6J6 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliH0Y6J6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini142 – 182G-patchInterPro annotationAdd BLAST41

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili15 – 52Sequence analysisAdd BLAST38

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1996 Eukaryota
ENOG410XWJ5 LUCA
GeneTreeiENSGT00790000123099

Family and domain databases

InterProiView protein in InterPro
IPR000467 G_patch_dom
IPR016967 Splicing_factor_SPF45
PfamiView protein in Pfam
PF01585 G-patch, 1 hit
PIRSFiPIRSF031066 Splicing_factor_SPF45, 1 hit
SMARTiView protein in SMART
SM00443 G_patch, 1 hit
PROSITEiView protein in PROSITE
PS50174 G_PATCH, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.Show allAlign All

H0Y6J6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
XPLADEYDPM FPNDYEKVVK RQREERQRQR ELERQKEIEE REKRRKDRHE
60 70 80 90 100
ASGFARRPDP DSDEDEDYER ERRKRSMGGA AIAPPTSLVE KDKELPRDFP
110 120 130 140 150
YEEDSRPRSQ SSKAAIPPPV YEEQDRPRSP TGPSNSFLAN MGGTVAHKIM
160 170 180 190 200
QKYGFREGQG LGKHEQGLST ALSVEKTSKR GGKIIVGDAT EKGVSPGKRV
210 220
TRGKGLAPSI SDMASLDPHV SAGGQ
Length:225
Mass (Da):25,283
Last modified:February 22, 2012 - v1
Checksum:i46248E7A86403BC0
GO

Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q96I25SPF45_HUMAN
Splicing factor 45
RBM17 SPF45
401Annotation score:
Q5W012Q5W012_HUMAN
Splicing factor 45
RBM17
240Annotation score:
Q5W011Q5W011_HUMAN
Splicing factor 45
RBM17
212Annotation score:
Q5W010Q5W010_HUMAN
Splicing factor 45
RBM17
221Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1
Non-terminal residuei225Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL157395 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000447032; ENSP00000406024; ENSG00000134453
UCSCiuc057rmm.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL157395 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliH0Y6J6
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

EPDiH0Y6J6
MaxQBiH0Y6J6
PeptideAtlasiH0Y6J6
PRIDEiH0Y6J6

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000447032; ENSP00000406024; ENSG00000134453
UCSCiuc057rmm.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000134453.15
HGNCiHGNC:16944 RBM17
OpenTargetsiENSG00000134453
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG1996 Eukaryota
ENOG410XWJ5 LUCA
GeneTreeiENSGT00790000123099

Miscellaneous databases

ChiTaRSiRBM17 human

Gene expression databases

BgeeiENSG00000134453 Expressed in 200 organ(s), highest expression level in small intestine Peyer's patch
ExpressionAtlasiH0Y6J6 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR000467 G_patch_dom
IPR016967 Splicing_factor_SPF45
PfamiView protein in Pfam
PF01585 G-patch, 1 hit
PIRSFiPIRSF031066 Splicing_factor_SPF45, 1 hit
SMARTiView protein in SMART
SM00443 G_patch, 1 hit
PROSITEiView protein in PROSITE
PS50174 G_PATCH, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiH0Y6J6_HUMAN
AccessioniPrimary (citable) accession number: H0Y6J6
Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: September 12, 2018
This is version 47 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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