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Protein
Submitted name:

AT-rich interactive domain-containing protein 1B

Gene

ARID1B

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
AT-rich interactive domain-containing protein 1BImported
Gene namesi
Name:ARID1BImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

EuPathDBiHostDB:ENSG00000049618.21
HGNCiHGNC:18040 ARID1B

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000049618

PTM / Processingi

Proteomic databases

MaxQBiH0Y3S9
PeptideAtlasiH0Y3S9
PRIDEiH0Y3S9

Expressioni

Gene expression databases

BgeeiENSG00000049618 Expressed in 217 organ(s), highest expression level in female reproductive system
ExpressionAtlasiH0Y3S9 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliH0Y3S9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini120 – 211ARIDInterPro annotationAdd BLAST92

Phylogenomic databases

eggNOGiKOG2510 Eukaryota
ENOG410Y034 LUCA
GeneTreeiENSGT00550000074575

Family and domain databases

Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR038040 ARID1B
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR021906 BAF250/Osa
PANTHERiPTHR12656 PTHR12656, 2 hits
PTHR12656:SF11 PTHR12656:SF11, 2 hits
PfamiView protein in Pfam
PF01388 ARID, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 16 potential isoforms that are computationally mapped.Show allAlign All

H0Y3S9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
AAVMQAAANS AQSRQGSFPG MNQSGLMASS SPYSQPMNNS SSLMNTQAPP
60 70 80 90 100
YSMAPAMVNS SAASVGLADM MSPGESKLPL PLKADGKEEG TPQPESKSKK
110 120 130 140 150
SSSSTTTGEK ITKVYELGNE PERKLWVDRY LTFMEERGSP VSSLPAVGKK
160 170 180 190 200
PLDLFRLYVC VKEIGGLAQV NKNKKWRELA TNLNVGTSSS AASSLKKQYI
210 220 230 240 250
QYLFAFECKI ERGEEPPPEV FSTGDTKKQP KLQPPSPGKW RRCSHWPRKA
260 270
QAPGLGGSGK VVSQSGQQGT WDF
Length:273
Mass (Da):29,454
Last modified:February 22, 2012 - v1
Checksum:i3F8771AB7F6326A0
GO

Computationally mapped potential isoform sequencesi

There are 16 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q8NFD5ARI1B_HUMAN
AT-rich interactive domain-containi...
ARID1B BAF250B, DAN15, KIAA1235, OSA2
2,236Annotation score:
H0Y7H8H0Y7H8_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,758Annotation score:
A0A1B0GVK1A0A1B0GVK1_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,539Annotation score:
A0A1B0GWJ2A0A1B0GWJ2_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,479Annotation score:
A0A1B0GTJ8A0A1B0GTJ8_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,495Annotation score:
A0A1B0GV63A0A1B0GV63_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,349Annotation score:
H0Y2R3H0Y2R3_HUMAN
AT-rich interactive domain-containi...
ARID1B
727Annotation score:
A0A1B0GTI6A0A1B0GTI6_HUMAN
AT-rich interactive domain-containi...
ARID1B
312Annotation score:
A0A1B0GU09A0A1B0GU09_HUMAN
AT-rich interactive domain-containi...
ARID1B
186Annotation score:
A0A1B0GU65A0A1B0GU65_HUMAN
AT-rich interactive domain-containi...
ARID1B
191Annotation score:
There are more potential isoformsShow all

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL049820 Genomic DNA No translation available.
AL136091 Genomic DNA No translation available.
AL162578 Genomic DNA No translation available.
AL355297 Genomic DNA No translation available.
AL591545 Genomic DNA No translation available.
KF458328 Genomic DNA No translation available.
KF458335 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000400790; ENSP00000383596; ENSG00000049618
UCSCiuc063sml.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL049820 Genomic DNA No translation available.
AL136091 Genomic DNA No translation available.
AL162578 Genomic DNA No translation available.
AL355297 Genomic DNA No translation available.
AL591545 Genomic DNA No translation available.
KF458328 Genomic DNA No translation available.
KF458335 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliH0Y3S9
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiH0Y3S9
PeptideAtlasiH0Y3S9
PRIDEiH0Y3S9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000400790; ENSP00000383596; ENSG00000049618
UCSCiuc063sml.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000049618.21
HGNCiHGNC:18040 ARID1B
OpenTargetsiENSG00000049618
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG2510 Eukaryota
ENOG410Y034 LUCA
GeneTreeiENSGT00550000074575

Miscellaneous databases

ChiTaRSiARID1B human

Gene expression databases

BgeeiENSG00000049618 Expressed in 217 organ(s), highest expression level in female reproductive system
ExpressionAtlasiH0Y3S9 baseline and differential

Family and domain databases

Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR038040 ARID1B
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR021906 BAF250/Osa
PANTHERiPTHR12656 PTHR12656, 2 hits
PTHR12656:SF11 PTHR12656:SF11, 2 hits
PfamiView protein in Pfam
PF01388 ARID, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiH0Y3S9_HUMAN
AccessioniPrimary (citable) accession number: H0Y3S9
Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: September 12, 2018
This is version 48 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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