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Protein
Submitted name:

AT-rich interactive domain-containing protein 1B

Gene

ARID1B

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
AT-rich interactive domain-containing protein 1BImported
Gene namesi
Name:ARID1BImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

EuPathDBiHostDB:ENSG00000049618.21
HGNCiHGNC:18040 ARID1B

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000049618

PTM / Processingi

Proteomic databases

EPDiH0Y2R3
PeptideAtlasiH0Y2R3
PRIDEiH0Y2R3

Expressioni

Gene expression databases

BgeeiENSG00000049618 Expressed in 217 organ(s), highest expression level in female reproductive system
ExpressionAtlasiH0Y2R3 baseline and differential

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini527 – 618ARIDInterPro annotationAdd BLAST92

Phylogenomic databases

GeneTreeiENSGT00550000074575

Family and domain databases

Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR038040 ARID1B
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR021906 BAF250/Osa
PANTHERiPTHR12656 PTHR12656, 1 hit
PTHR12656:SF11 PTHR12656:SF11, 1 hit
PfamiView protein in Pfam
PF01388 ARID, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 16 potential isoforms that are computationally mapped.Show allAlign All

H0Y2R3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPPQYGQQGV SGYCQQGQQP YYSQQPQPPH LPPQAQYLPS QSQQRYQPQQ
60 70 80 90 100
DMSQEGYGTR SQPPLAPGKP NHEDLNLIQQ ERPSSLPDLS GSIDDLPTGT
110 120 130 140 150
EATLSSAVSA SGSTSSQGDQ SNPAQSPFSP HASPHLSSIP GGPSPSPVGS
160 170 180 190 200
PVGSNQSRSG PISPASIPGS QMPPQPPGSQ SESSSHPALS QSPMPQERGF
210 220 230 240 250
MAGTQRNPQM AQYGPQQTGP SMSPHPSPGG QMHAGISSFQ QSNSSGTYGP
260 270 280 290 300
QMSQYGPQGN YSRPPAYSGV PSASYSGPGP GMGISANNQM HGQGPSQPCG
310 320 330 340 350
AVPLGRMPSA GMQNRPFPGN MSSMTPSSPG MSQQGGPGMG PPMPTVNRKA
360 370 380 390 400
QEAAAAVMQA AANSAQSRQG SFPGMNQSGL MASSSPYSQP MNNSSSLMNT
410 420 430 440 450
QAPPYSMAPA MVNSSAASVG LADMMSPGES KLPLPLKADG KEEGTPQPES
460 470 480 490 500
KSKDSYSSQG ISQPPTPGNL PVPSPMSPSS ASISSFHGDE SDSISSPGWP
510 520 530 540 550
KTPSSPKSSS STTTGEKITK VYELGNEPER KLWVDRYLTF MEERGSPVSS
560 570 580 590 600
LPAVGKKPLD LFRLYVCVKE IGGLAQVNKN KKWRELATNL NVGTSSSAAS
610 620 630 640 650
SLKKQYIQYL FAFECKIERG EEPPPEVFST GDTKKQPKLQ PPSPVVQMEP
660 670 680 690 700
RACDTGGSGR KASWSRPAPR ARAGGSRHTQ ASGGRRQRHP GLQKPLDSLP
710 720
PTQQVASPIP VPSLGKVSGN IFVVKGK
Length:727
Mass (Da):76,073
Last modified:October 5, 2016 - v2
Checksum:iEA8FC166A7F9BA5D
GO

Computationally mapped potential isoform sequencesi

There are 16 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q8NFD5ARI1B_HUMAN
AT-rich interactive domain-containi...
ARID1B BAF250B, DAN15, KIAA1235, OSA2
2,236Annotation score:
H0Y7H8H0Y7H8_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,758Annotation score:
A0A1B0GVK1A0A1B0GVK1_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,539Annotation score:
A0A1B0GWJ2A0A1B0GWJ2_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,479Annotation score:
A0A1B0GTJ8A0A1B0GTJ8_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,495Annotation score:
A0A1B0GV63A0A1B0GV63_HUMAN
AT-rich interactive domain-containi...
ARID1B
1,349Annotation score:
H0Y3S9H0Y3S9_HUMAN
AT-rich interactive domain-containi...
ARID1B
273Annotation score:
A0A1B0GTI6A0A1B0GTI6_HUMAN
AT-rich interactive domain-containi...
ARID1B
312Annotation score:
A0A1B0GU09A0A1B0GU09_HUMAN
AT-rich interactive domain-containi...
ARID1B
186Annotation score:
A0A1B0GU65A0A1B0GU65_HUMAN
AT-rich interactive domain-containi...
ARID1B
191Annotation score:
There are more potential isoformsShow all

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL049820 Genomic DNA No translation available.
AL136091 Genomic DNA No translation available.
AL162578 Genomic DNA No translation available.
AL355297 Genomic DNA No translation available.
AL591545 Genomic DNA No translation available.
KF458328 Genomic DNA No translation available.
KF458335 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000319584; ENSP00000313006; ENSG00000049618
UCSCiuc063smg.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL049820 Genomic DNA No translation available.
AL136091 Genomic DNA No translation available.
AL162578 Genomic DNA No translation available.
AL355297 Genomic DNA No translation available.
AL591545 Genomic DNA No translation available.
KF458328 Genomic DNA No translation available.
KF458335 Genomic DNA No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

EPDiH0Y2R3
PeptideAtlasiH0Y2R3
PRIDEiH0Y2R3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000319584; ENSP00000313006; ENSG00000049618
UCSCiuc063smg.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000049618.21
HGNCiHGNC:18040 ARID1B
OpenTargetsiENSG00000049618
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00550000074575

Miscellaneous databases

ChiTaRSiARID1B human

Gene expression databases

BgeeiENSG00000049618 Expressed in 217 organ(s), highest expression level in female reproductive system
ExpressionAtlasiH0Y2R3 baseline and differential

Family and domain databases

Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR038040 ARID1B
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR021906 BAF250/Osa
PANTHERiPTHR12656 PTHR12656, 1 hit
PTHR12656:SF11 PTHR12656:SF11, 1 hit
PfamiView protein in Pfam
PF01388 ARID, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiH0Y2R3_HUMAN
AccessioniPrimary (citable) accession number: H0Y2R3
Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: October 5, 2016
Last modified: September 12, 2018
This is version 47 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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