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Entry version 55 (26 Feb 2020)
Sequence version 1 (22 Feb 2012)
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Protein
Submitted name:

PKHD1 ciliary IPT domain containing fibrocystin/polyductin

Gene

PKHD1

Organism
Otolemur garnettii (Small-eared galago) (Garnett's greater bushbaby)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
PKHD1 ciliary IPT domain containing fibrocystin/polyductinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:PKHD1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOtolemur garnettii (Small-eared galago) (Garnett's greater bushbaby)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri30611 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesStrepsirrhiniLorisiformesGalagidaeOtolemur
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005225 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei3865 – 3888HelicalSequence analysisAdd BLAST24

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 17Sequence analysisAdd BLAST17
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500354549318 – 4077Sequence analysisAdd BLAST4060

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
30611.ENSOGAP00000013917

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini325 – 485PA14InterPro annotationAdd BLAST161
Domaini1934 – 2055G8InterPro annotationAdd BLAST122
Domaini2752 – 2878G8InterPro annotationAdd BLAST127

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni3897 – 3932DisorderedSequence analysisAdd BLAST36
Regioni3948 – 3968DisorderedSequence analysisAdd BLAST21
Regioni4030 – 4054DisorderedSequence analysisAdd BLAST25

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi4038 – 4054PolarSequence analysisAdd BLAST17

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IEIF Eukaryota
ENOG410XQ01 LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000160697

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_000057_1_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
H0XDH1

Identification of Orthologs from Complete Genome Data

More...
OMAi
QSCAINV

TreeFam database of animal gene trees

More...
TreeFami
TF329582

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.160.20.10, 1 hit
2.60.40.10, 5 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR039448 Beta_helix
IPR019316 G8_domain
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
IPR002909 IPT_dom
IPR037524 PA14/GLEYA
IPR006626 PbH1
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
IPR028839 PKHD1

The PANTHER Classification System

More...
PANTHERi
PTHR46769:SF1 PTHR46769:SF1, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13229 Beta_helix, 2 hits
PF10162 G8, 2 hits
PF01833 TIG, 5 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01225 G8, 2 hits
SM00429 IPT, 5 hits
SM00710 PbH1, 8 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51126 SSF51126, 2 hits
SSF81296 SSF81296, 6 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51484 G8, 2 hits
PS51820 PA14, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

H0XDH1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTIWLISLTS IQVLLLAVPY LSLRIEPGEG SLAGGTWITV ILDGLGLGVL
60 70 80 90 100
YPTDGSQMEI HLVNMNVAMP ALPSIPCDVF PVFLDLPVVT CRTRSLPSGA
110 120 130 140 150
HEGLYSLEVY FGGQAVGSPS SGAQDSCTFK FSKAQTPVVY QVHPSSGVPG
160 170 180 190 200
ELIHVHGWII TGKLETFDVD AEYIDSPLIL EAQEDKWVTP CSLVNRQTGS
210 220 230 240 250
RYPIQEDRGL GTLQCCVEGN YIGSQNVSFS VFNKGKSMVD KSAWLISAKQ
260 270 280 290 300
ELFLYQTHSE VLSVLPETGS LGGRTDITIT GDFFDNSAQV TIAGIPCDIR
310 320 330 340 350
RVSPRKIECT TRAPGKDARL TAPQAGNRGL LFEVGDAAEG LALTEATPGY
360 370 380 390 400
RWQIVPNASS PSGFWSKAGQ PFRARLSGFF VAPETNNYTF WIQADSQASL
410 420 430 440 450
HLSGSEEPRT KVKVASIGVG SADWFDSWEQ HGGEGMWQQK TPKLELLGGA
460 470 480 490 500
KYYLEAEHHG IAPSTGMRIG VQIHNTWLSP DVVTTYLREK HQIRARAQRL
510 520 530 540 550
PEIQVLNVSG SGNFFLMWDN VSSQPIPANA TAHQIQTTIE ELLAVKCKLE
560 570 580 590 600
PPSANVLLRL GFEQGPEVSS SDGDLTSGSE PFCGRFSLRQ PRHLVLMPSA
610 620 630 640 650
SQKGYWLDQH THLCLAYKGH TNMIVKMTVS YTTSFHNVTQ KNVTCDWTLT
660 670 680 690 700
MTSPERWRFT CTDLWETCVR HSRDVQPPRE DSPVRVHQID LLPLAQETGL
710 720 730 740 750
LFVDEIIIAD TNVTVSQADS GTARPGGNLV ESVSVEGSPP VYSVASWLAG
760 770 780 790 800
CGMELPLISA CSVATEGTEE GSGLDQVTTQ RLQRTSPPLG GHFHIQLSNT
810 820 830 840 850
VILDVPVHIS ASHLHKLLQS NADAVTSRYL NASDFTVKED LNTCYEHVWT
860 870 880 890 900
LSWSTQIGDL PNFIRVSAGN LTGLNPVATT RVVYDGGVFL GPVFGDMLAT
910 920 930 940 950
ANQCTQVVVQ VNDIPAHCPG SCSFQYLQAS TPWVHSMWYS LDADANLLVY
960 970 980 990 1000
IIGTGFSSDS KSLQVTVNRT NCRVIFSNQT NVVCQTEMLP VGEHWISMLV
1010 1020 1030 1040 1050
RPFGLAINAS GEGLFLKVEP RLDAVEPSRA AEIGGLWATI RGSSLEGVRL
1060 1070 1080 1090 1100
VFFGSQSCAI NVTTSGSQRI QCRVPPMGKD GRIVNVTVIS GDHSAVLPRA
1110 1120 1130 1140 1150
FTYVSSLNPA IVTLSRNRSN VAGGETLLIG MTSLVNCTDL AVEVYVGGAL
1160 1170 1180 1190 1200
AGVRAQMAWG VEVVLPALPS GLHGISVSIN GVSIRSQGVD LYIQYITEVF
1210 1220 1230 1240 1250
SIQPCCGSLL GGTFLSISGI GFGRNPASVW VLVGNQSCDI VNVTEVSIHC
1260 1270 1280 1290 1300
KTPPAPQMPD ADASAVSAPV EVWVGNMSFT HGSSASLVGK GFTFMYEAAA
1310 1320 1330 1340 1350
TPVVTSLQGE ITNSSLRLYV GGSNLSNSVV LLGSLTCDLE TQSSQSSVNL
1360 1370 1380 1390 1400
FGCSFPLPGL EAGIYPFQVY QKQMGLANTS AVPQQFVMTP WIMAVSPTHG
1410 1420 1430 1440 1450
SACGGTVLTV RGLALNSKRR SVQVDLSGPF TCVVLSVGDH TVLCKVSPVG
1460 1470 1480 1490 1500
GPLPGVSFSL DVTVLVNDVT SECQGNCTLF MQEETTPVVD AMTTNISGSL
1510 1520 1530 1540 1550
TTVLIRAQRL GTTASELMVF VDDQLPCNVT FFNESYVACQ ISDLIPGPHY
1560 1570 1580 1590 1600
LSVFQARNGY ACFGNISRRF YVIPQVFHYF PKHFSIYGGS LLAIEGTALR
1610 1620 1630 1640 1650
GKNTTSVSIG QQACLAVDIS AELIQCVVPA GNGSVALEIE VDGLLFHIGI
1660 1670 1680 1690 1700
IDYSHDFTPE LLSFSQSDDI LTFAVAQISG ATNMDIFIGM SPCVSVSGNH
1710 1720 1730 1740 1750
TVLQCTVPCL PAGEYRVRGY DHIRGWASSI LVFTSRVIIT AVTKNFGYLS
1760 1770 1780 1790 1800
GGLVHVFGTG FSPGKLSAAV CGAPCRILAN ATVSAFSCLV LPLDVLMAFL
1810 1820 1830 1840 1850
CGLKHEEDNC EGTSCTYVQC DLTVAVGTET LPESWPYLYI CEESAQCLFA
1860 1870 1880 1890 1900
PDHWTESAFP FSFSGLFISP KVERDEVLIY NSSCNITMET EAEMECETPN
1910 1920 1930 1940 1950
QPITAKITEI RKSWGQNTQG NFSFQFCQRW SKAHSWFPER VPQDGDNVTV
1960 1970 1980 1990 2000
QRGQLLLLDT NTSILNLLHV KGGKLIFLAP GPIELRAHAI LVSDGGELRI
2010 2020 2030 2040 2050
GSEDKPFQGK AWIKLYGSFY STRFFPYGIK FLAVRNGTLS LHGSLPEVIV
2060 2070 2080 2090 2100
THLRVAAHAQ DTVLALEDAV DWQPGDEVVI ISGTAVEGVK PMEEIVIVET
2110 2120 2130 2140 2150
VHNTDLYLRS PLRYSYNFTE NLVAGEHLSL KVTVALLSRS ITIQGNLTKE
2160 2170 2180 2190 2200
RMELLASCQE ASASEGNWKR CLYSMSEKML GSRDLGASVI IQSFPEEPSL
2210 2220 2230 2240 2250
VQLKGVQFQD LGQAFQKHLS SLTLVGTLRD SYVQGCTVRN SFSRGLGICR
2260 2270 2280 2290 2300
TVGLKVDSNI FYNILGHALL VGTFMEIRHI SWEAIPGRKK DWSEVGNIVR
2310 2320 2330 2340 2350
NNVIIGVSGA EGLSNPEMLT PSGIYIRNPT NIIEGNRVCA AGFGYFFHLV
2360 2370 2380 2390 2400
TRQTSQAPLL SFTQNIAHSC TRYGLFVYPK FQPPWDNGTS PTLFQNFTVW
2410 2420 2430 2440 2450
ESLGGAQIVR SSNLHLKNFQ VYSCRDFGID ILESDANTSV TDSLLLGHFA
2460 2470 2480 2490 2500
HKKSQEGLCM SAGIKTPQRW ELMVSNTAFV NFDLINCVAI RTCSGCSQGQ
2510 2520 2530 2540 2550
GGFTVKTNQL KFTNSPNLVA FPFPHAAILE DLDGSLSGEN TSHILPSMET
2560 2570 2580 2590 2600
LLASCLVNAS FSQIVPGSVC GGGARFHRMS IGLAHAADTP YDLTITDSRN
2610 2620 2630 2640 2650
KTTTVNYVHD TLSNPHGWMA LLLDQETYSL RFQNPWINRS LQYSATFDNF
2660 2670 2680 2690 2700
APGNSLLLVH TDLPPSPNIL IRCGSHVGLS LPFLPSPGQN QGCDWFFKTQ
2710 2720 2730 2740 2750
LRQLTYLVAG EGQVQVIVQV TEGASPTISA STSAPESALK WSLSETWQGV
2760 2770 2780 2790 2800
EEGWGGYNHS IPGPGDDVLI LSNRTVLVDT DLPFLRGLYV MGTLDFPVDR
2810 2820 2830 2840 2850
SNVLSVACMV IAGGELKVGT LENPLEKEQK LLILLRASEG VFCDRLDGIR
2860 2870 2880 2890 2900
IDPGTIGVYG KVQLNGAYPK KSWTRLGADI ASGNERIIVE DAVDWRPHDK
2910 2920 2930 2940 2950
IVLSSSSYEP HEAEILTVKE AQGHHIRIYE RLKHRHIGSA HVMDDGRQIR
2960 2970 2980 2990 3000
LAAEVGLLTR NIQIQPDISC RGRVLVGSFR NSNREEFSGV LQLLNVEMQN
3010 3020 3030 3040 3050
FGSPSYSSIE FTSVSAESWV TSSTLHQSCG GGIHAVASHG IRLNDNVVFG
3060 3070 3080 3090 3100
TAGHGMDLEG QAYSLTNNLV VLVIQPAWSS VWVAGIKMNH AKDIDLRGNV
3110 3120 3130 3140 3150
VAGSERLGFH IRGHQCPSSE VLWSDNVAHS SLHGLHLYEE SGLGNCTGIS
3160 3170 3180 3190 3200
GFLAFKNFDY GAMLRVEDRM EIENITLVDN GVGLLAVVYV SPASQSSMEN
3210 3220 3230 3240 3250
MQIVLRSSVI VATSSSFDCI QDRVKPHSAN VTSADRAPSN PRGGRVGILW
3260 3270 3280 3290 3300
PVFTSEPNQW PQRPWHEVRN DRSVSGIMKL QDVTFTGFVK SCHSDDLDVC
3310 3320 3330 3340 3350
FLPNIESTGI MPPITAERTR MLKMKDKNKF YFPLLQPRKD LERDVCAESN
3360 3370 3380 3390 3400
CENPRKYLFK DLDGRALGLP PPVSVFPKTE AEWTGSFFNT GTFREEQKCT
3410 3420 3430 3440 3450
YRSLVHGYIC KQTDHVVLVL DNADAMWTIQ KLYPVVSVTG GFVDTFSGVN
3460 3470 3480 3490 3500
ANTSCSIFRS GSTFYSILPT RQITKVCFAD RTPQVLRFFL LGNESTSKLL
3510 3520 3530 3540 3550
LAIFYHELQS PRVFLRESFI PPSLAQSTSS LLNESIGVNY FNVMDNLLYV
3560 3570 3580 3590 3600
VLQGGEPIEI RSGISIHLAL TVTFSVLGKD WERMILERLT SFLQIGQHQI
3610 3620 3630 3640 3650
RFVQEMLGNE DTLKAIADST AKRKRNCPSV TCASHYRRVG QRRPLMMEMP
3660 3670 3680 3690 3700
SYGVPPPTTM EPISKVIVIE IGDLPTVSST VMIPSLSSNK LQNLAHQVIT
3710 3720 3730 3740 3750
AQQTGELGSI LNVTIGAILV TQPKGVLGNG NTSSFTSGNL VYIRPYALSI
3760 3770 3780 3790 3800
LVQPSDGEVG KELPVQPQLV FLDEQNRRVE SLGSPSEPWT VSASLEGTSD
3810 3820 3830 3840 3850
SVLQGSTCIA ELHFGYWSFL YSAKLIRAEN KNFTFALISQ TGANFTARSR
3860 3870 3880 3890 3900
PFAVLPVTRR EKSTVILAVS VSSAVSWLAL SCLLCCWFKK NKSHRKTKPE
3910 3920 3930 3940 3950
EISESQTNDQ KDHIHITSKC RGSRVRTEKE EPVVREDVKM EVVLGKPHQS
3960 3970 3980 3990 4000
RNGVSRRKVS RHSIPEVAAV PAPSVTGTLS QGHTCAPGSP AWQTKLQETG
4010 4020 4030 4040 4050
NWKEAQEQLL RYQRAGHGQL LLLYPDLRQD RQKQPEQSPL SKESGSSRLS
4060 4070
QEKNATCGGA EAFCLRSVHP EAMQEQL
Length:4,077
Mass (Da):444,788
Last modified:February 22, 2012 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBF40EB2E037FB104
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AAQR03066569 Genomic DNA No translation available.
AAQR03066570 Genomic DNA No translation available.
AAQR03066571 Genomic DNA No translation available.
AAQR03066572 Genomic DNA No translation available.
AAQR03066573 Genomic DNA No translation available.
AAQR03066574 Genomic DNA No translation available.
AAQR03066575 Genomic DNA No translation available.
AAQR03066576 Genomic DNA No translation available.
AAQR03066577 Genomic DNA No translation available.
AAQR03066578 Genomic DNA No translation available.

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSOGAT00000015545; ENSOGAP00000013917; ENSOGAG00000015530

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAQR03066569 Genomic DNA No translation available.
AAQR03066570 Genomic DNA No translation available.
AAQR03066571 Genomic DNA No translation available.
AAQR03066572 Genomic DNA No translation available.
AAQR03066573 Genomic DNA No translation available.
AAQR03066574 Genomic DNA No translation available.
AAQR03066575 Genomic DNA No translation available.
AAQR03066576 Genomic DNA No translation available.
AAQR03066577 Genomic DNA No translation available.
AAQR03066578 Genomic DNA No translation available.

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi30611.ENSOGAP00000013917

Genome annotation databases

EnsembliENSOGAT00000015545; ENSOGAP00000013917; ENSOGAG00000015530

Phylogenomic databases

eggNOGiENOG410IEIF Eukaryota
ENOG410XQ01 LUCA
GeneTreeiENSGT00940000160697
HOGENOMiCLU_000057_1_0_1
InParanoidiH0XDH1
OMAiQSCAINV
TreeFamiTF329582

Family and domain databases

Gene3Di2.160.20.10, 1 hit
2.60.40.10, 5 hits
InterProiView protein in InterPro
IPR039448 Beta_helix
IPR019316 G8_domain
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
IPR002909 IPT_dom
IPR037524 PA14/GLEYA
IPR006626 PbH1
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
IPR028839 PKHD1
PANTHERiPTHR46769:SF1 PTHR46769:SF1, 1 hit
PfamiView protein in Pfam
PF13229 Beta_helix, 2 hits
PF10162 G8, 2 hits
PF01833 TIG, 5 hits
SMARTiView protein in SMART
SM01225 G8, 2 hits
SM00429 IPT, 5 hits
SM00710 PbH1, 8 hits
SUPFAMiSSF51126 SSF51126, 2 hits
SSF81296 SSF81296, 6 hits
PROSITEiView protein in PROSITE
PS51484 G8, 2 hits
PS51820 PA14, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiH0XDH1_OTOGA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: H0XDH1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: February 26, 2020
This is version 55 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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