UniProtKB - H0WP78 (H0WP78_OTOGA)
Protein
Submitted name:
Uncharacterized protein
Gene
LHX9
Organism
Otolemur garnettii (Small-eared galago) (Garnett's greater bushbaby)
Status
Functioni
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
DNA bindingi | 267 – 326 | HomeoboxPROSITE-ProRule annotationAdd BLAST | 60 |
GO - Molecular functioni
- DNA-binding transcription factor activity, RNA polymerase II-specific Source: InterPro
- metal ion binding Source: UniProtKB-KW
- sequence-specific double-stranded DNA binding Source: Ensembl
GO - Biological processi
- cell population proliferation Source: Ensembl
- female gonad development Source: Ensembl
- gonad morphogenesis Source: Ensembl
- male gonad development Source: Ensembl
Keywordsi
Molecular function | DNA-bindingPROSITE-ProRule annotationARBA annotation |
Ligand | Metal-binding, Zinc |
Names & Taxonomyi
Protein namesi | Submitted name: Uncharacterized proteinImported |
Gene namesi | Name:LHX9Imported |
Organismi | Otolemur garnettii (Small-eared galago) (Garnett's greater bushbaby)Imported |
Taxonomic identifieri | 30611 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Strepsirrhini › Lorisiformes › Galagidae › Otolemur |
Proteomesi |
|
Subcellular locationi
Keywords - Cellular componenti
NucleusPROSITE-ProRule annotationARBA annotationFamily & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 69 – 130 | LIM zinc-bindingInterPro annotationAdd BLAST | 62 | |
Domaini | 131 – 193 | LIM zinc-bindingInterPro annotationAdd BLAST | 63 | |
Domaini | 265 – 325 | HomeoboxInterPro annotationAdd BLAST | 61 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 248 – 272 | DisorderedSequence analysisAdd BLAST | 25 | |
Regioni | 330 – 365 | DisorderedSequence analysisAdd BLAST | 36 | |
Regioni | 378 – 397 | DisorderedSequence analysisAdd BLAST | 20 |
Keywords - Domaini
HomeoboxPROSITE-ProRule annotationARBA annotation, LIM domainPROSITE-ProRule annotationARBA annotation, RepeatARBA annotationPhylogenomic databases
eggNOGi | KOG0490, Eukaryota |
GeneTreei | ENSGT00940000158821 |
HOGENOMi | CLU_027802_4_1_1 |
InParanoidi | H0WP78 |
OMAi | QQAYAPT |
OrthoDBi | 1174930at2759 |
TreeFami | TF315442 |
Family and domain databases
CDDi | cd00086, homeodomain, 1 hit |
InterProi | View protein in InterPro IPR009057, Homeobox-like_sf IPR017970, Homeobox_CS IPR001356, Homeobox_dom IPR001781, Znf_LIM |
Pfami | View protein in Pfam PF00046, Homeodomain, 1 hit PF00412, LIM, 2 hits |
SMARTi | View protein in SMART SM00389, HOX, 1 hit SM00132, LIM, 2 hits |
SUPFAMi | SSF46689, SSF46689, 1 hit |
PROSITEi | View protein in PROSITE PS00027, HOMEOBOX_1, 1 hit PS50071, HOMEOBOX_2, 1 hit PS00478, LIM_DOMAIN_1, 1 hit PS50023, LIM_DOMAIN_2, 2 hits |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
H0WP78-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MEIVGCRAED NSCPFRPSAM LFHGISGGHI QGIMEEMERR SKTEARLAKG
60 70 80 90 100
AQLNGRDAGM PPLSPEKPAL CAGCGGKISD RYYLLAVDKQ WHLRCLKCCE
110 120 130 140 150
CKLALESELT CFAKDGSIYC KEDYYRRFSV QRCARCHLGI SASEMVMRAR
160 170 180 190 200
DSVYHLSCFT CSTCNKTLTT GDHFGMKDSL VYCRAHFETL LQGEYPPQLS
210 220 230 240 250
YTELAAKSGG LALPYFNGTG TVQKGRPRKR KSPALGVDIV NYNSGCNENE
260 270 280 290 300
ADHLDRDQQP YPPSQKTKRM RTSFKHHQLR TMKSYFAINH NPDAKDLKQL
310 320 330 340 350
AQKTGLTKRV LQVWFQNARA KFRRNLLRQE NGGVDKADGT SLPAPPSADS
360 370 380 390
GALTPPGTAT TLTDLTNPTI TVVTSVTSNM DSHESGSPSQ TTLTNLF
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketH0XSA3 | H0XSA3_OTOGA | Uncharacterized protein | LHX9 | 388 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AAQR03089758 Genomic DNA No translation available. AAQR03089759 Genomic DNA No translation available. |
RefSeqi | XP_003792355.1, XM_003792307.2 |
Genome annotation databases
Ensembli | ENSOGAT00000004119; ENSOGAP00000003672; ENSOGAG00000004115 |
GeneIDi | 100945686 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AAQR03089758 Genomic DNA No translation available. AAQR03089759 Genomic DNA No translation available. |
RefSeqi | XP_003792355.1, XM_003792307.2 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 30611.ENSOGAP00000003672 |
Genome annotation databases
Ensembli | ENSOGAT00000004119; ENSOGAP00000003672; ENSOGAG00000004115 |
GeneIDi | 100945686 |
Organism-specific databases
CTDi | 56956 |
Phylogenomic databases
eggNOGi | KOG0490, Eukaryota |
GeneTreei | ENSGT00940000158821 |
HOGENOMi | CLU_027802_4_1_1 |
InParanoidi | H0WP78 |
OMAi | QQAYAPT |
OrthoDBi | 1174930at2759 |
TreeFami | TF315442 |
Family and domain databases
CDDi | cd00086, homeodomain, 1 hit |
InterProi | View protein in InterPro IPR009057, Homeobox-like_sf IPR017970, Homeobox_CS IPR001356, Homeobox_dom IPR001781, Znf_LIM |
Pfami | View protein in Pfam PF00046, Homeodomain, 1 hit PF00412, LIM, 2 hits |
SMARTi | View protein in SMART SM00389, HOX, 1 hit SM00132, LIM, 2 hits |
SUPFAMi | SSF46689, SSF46689, 1 hit |
PROSITEi | View protein in PROSITE PS00027, HOMEOBOX_1, 1 hit PS50071, HOMEOBOX_2, 1 hit PS00478, LIM_DOMAIN_1, 1 hit PS50023, LIM_DOMAIN_2, 2 hits |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | H0WP78_OTOGA | |
Accessioni | H0WP78Primary (citable) accession number: H0WP78 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | February 22, 2012 |
Last sequence update: | February 22, 2012 | |
Last modified: | October 7, 2020 | |
This is version 60 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |