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UniProtKB - H0VT60 (H0VT60_CAVPO)
Protein
Submitted name:
Syncoilin, intermediate filament protein
Gene
SYNC
Organism
Cavia porcellus (Guinea pig)
Status
Names & Taxonomyi
Protein namesi | Submitted name: Syncoilin, intermediate filament proteinImported |
Gene namesi | Name:SYNCImported |
Organismi | Cavia porcellus (Guinea pig)Imported |
Taxonomic identifieri | 10141 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Hystricomorpha › Caviidae › Cavia |
Proteomesi |
|
Subcellular locationi
Cytoskeleton
- intermediate filament Source: UniProtKB-KW
Cytosol
- cytosol Source: Ensembl
Plasma Membrane
- sarcolemma Source: Ensembl
Other locations
- neuromuscular junction Source: Ensembl
- Z disc Source: Ensembl
Keywords - Cellular componenti
Intermediate filamentARBA annotationExpressioni
Gene expression databases
Bgeei | ENSCPOG00000015355, Expressed in heart left ventricle and 14 other tissues |
Structurei
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 157 – 452 | IF rodInterPro annotationAdd BLAST | 296 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 41 | DisorderedSequence analysisAdd BLAST | 41 | |
Regioni | 131 – 155 | DisorderedSequence analysisAdd BLAST | 25 | |
Regioni | 401 – 425 | DisorderedSequence analysisAdd BLAST | 25 |
Coiled coil
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Coiled coili | 161 – 188 | Sequence analysisAdd BLAST | 28 | |
Coiled coili | 214 – 234 | Sequence analysisAdd BLAST | 21 | |
Coiled coili | 263 – 297 | Sequence analysisAdd BLAST | 35 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 22 – 41 | Polar residuesSequence analysisAdd BLAST | 20 |
Keywords - Domaini
Coiled coilSequence analysisARBA annotationPhylogenomic databases
eggNOGi | ENOG502RKZJ, Eukaryota |
GeneTreei | ENSGT00390000018108 |
HOGENOMi | CLU_072232_0_0_1 |
InParanoidi | H0VT60 |
OrthoDBi | 906986at2759 |
Family and domain databases
InterProi | View protein in InterPro IPR039008, IF_rod_dom IPR027702, Syncoilin |
PANTHERi | PTHR47147, PTHR47147, 1 hit |
Pfami | View protein in Pfam PF00038, Filament, 1 hit |
SMARTi | View protein in SMART SM01391, Filament, 1 hit |
PROSITEi | View protein in PROSITE PS51842, IF_ROD_2, 1 hit |
i Sequence
Sequence statusi: Complete.
H0VT60-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MATPEARSGG DGGPQAGREV TAEAVSQENS ESLSVTETLN PEATLSLEGT
60 70 80 90 100
VNLEDILYLG DTDDFEEILY MGDTQEPEEI LYIEETGHPE ETLFMGEPVK
110 120 130 140 150
PGETQYEETV KPHVDQAESL SPEQIVCETE TVAREEKSNP EESLKAEPSP
160 170 180 190 200
STEENLSIED LELLEDRFQQ CVQAVAQLEE ERDQLIHELV LLREPALQEV
210 220 230 240 250
QQVHQDILAA YKLHAQTELE RDGLREEIRL VKQKLFKVTK ECVAYQYQLE
260 270 280 290 300
CRQQEVAQFA DFREVLTTKA AQLSGELAQL QDAYQKQKEQ LRQQLEAPPS
310 320 330 340 350
QRDGHFLQES RQLSAQFEHL MAESRQGLEE EYEPQLLRLL ERKEAGTKAL
360 370 380 390 400
QKTQAEIQEM KEALRPLQAE ARQLQLQKRN LEDQITLVRQ KRDEEVQQYR
410 420 430 440 450
EQQEEMEERK RQLRNGVQLQ QQKNKDMEQL RISLAEELST YKAMLPKSLE
460 470
QADALTSQAG GMEKQSQGAA
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AAKN02028589 Genomic DNA No translation available. |
RefSeqi | XP_013009473.1, XM_013154019.1 |
Genome annotation databases
Ensembli | ENSCPOT00000015504; ENSCPOP00000013840; ENSCPOG00000015355 |
GeneIDi | 100727678 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AAKN02028589 Genomic DNA No translation available. |
RefSeqi | XP_013009473.1, XM_013154019.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 10141.ENSCPOP00000013840 |
Genome annotation databases
Ensembli | ENSCPOT00000015504; ENSCPOP00000013840; ENSCPOG00000015355 |
GeneIDi | 100727678 |
Organism-specific databases
CTDi | 81493 |
Phylogenomic databases
eggNOGi | ENOG502RKZJ, Eukaryota |
GeneTreei | ENSGT00390000018108 |
HOGENOMi | CLU_072232_0_0_1 |
InParanoidi | H0VT60 |
OrthoDBi | 906986at2759 |
Gene expression databases
Bgeei | ENSCPOG00000015355, Expressed in heart left ventricle and 14 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR039008, IF_rod_dom IPR027702, Syncoilin |
PANTHERi | PTHR47147, PTHR47147, 1 hit |
Pfami | View protein in Pfam PF00038, Filament, 1 hit |
SMARTi | View protein in SMART SM01391, Filament, 1 hit |
PROSITEi | View protein in PROSITE PS51842, IF_ROD_2, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | H0VT60_CAVPO | |
Accessioni | H0VT60Primary (citable) accession number: H0VT60 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | February 22, 2012 |
Last sequence update: | November 22, 2017 | |
Last modified: | June 2, 2021 | |
This is version 52 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |