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Entry version 61 (12 Aug 2020)
Sequence version 2 (22 Nov 2017)
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Protein
Submitted name:

PKHD1 ciliary IPT domain containing fibrocystin/polyductin

Gene

PKHD1

Organism
Cavia porcellus (Guinea pig)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
PKHD1 ciliary IPT domain containing fibrocystin/polyductinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:PKHD1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCavia porcellus (Guinea pig)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10141 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaHystricomorphaCaviidaeCavia
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005447 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei3821 – 3844HelicalSequence analysisAdd BLAST24

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 25Sequence analysisAdd BLAST25
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_501247487426 – 4024Sequence analysisAdd BLAST3999

Keywords - PTMi

GlycoproteinARBA annotation

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSCPOG00000010473, Expressed in adult mammalian kidney and 2 other tissues

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
10141.ENSCPOP00000009404

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini319 – 479PA14InterPro annotationAdd BLAST161
Domaini1922 – 2043G8InterPro annotationAdd BLAST122
Domaini2731 – 2849G8InterPro annotationAdd BLAST119

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni3852 – 3890DisorderedSequence analysisAdd BLAST39
Regioni3923 – 3958DisorderedSequence analysisAdd BLAST36
Regioni3979 – 4024DisorderedSequence analysisAdd BLAST46

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi3861 – 3876PolarSequence analysisAdd BLAST16
Compositional biasi3938 – 3958PolarSequence analysisAdd BLAST21
Compositional biasi3999 – 4013PolarSequence analysisAdd BLAST15

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502QR85, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000160697

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_000057_1_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
H0VGZ2

TreeFam database of animal gene trees

More...
TreeFami
TF329582

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.160.20.10, 1 hit
2.60.40.10, 5 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR039448, Beta_helix
IPR019316, G8_domain
IPR013783, Ig-like_fold
IPR014756, Ig_E-set
IPR002909, IPT_dom
IPR037524, PA14/GLEYA
IPR006626, PbH1
IPR012334, Pectin_lyas_fold
IPR011050, Pectin_lyase_fold/virulence
IPR028839, PKHD1

The PANTHER Classification System

More...
PANTHERi
PTHR46769:SF1, PTHR46769:SF1, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13229, Beta_helix, 2 hits
PF10162, G8, 2 hits
PF01833, TIG, 6 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01225, G8, 2 hits
SM00429, IPT, 5 hits
SM00710, PbH1, 10 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51126, SSF51126, 2 hits
SSF81296, SSF81296, 5 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51484, G8, 2 hits
PS51820, PA14, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

H0VGZ2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
TMTGWVISLM SIEVLLLSVP HLSLHIEPEE GSLAGGTWIT ITFDGWDLSV
60 70 80 90 100
LYPNNGSRLE ISLVNVAVPA LPSVPCDITP VFLAVPVVMC QTRSLLSQAY
110 120 130 140 150
EGLYSLEVRS GGQVVGPQDN CTFKFSKAQT PVIYQVNPPN GVPGKLIHVY
160 170 180 190 200
GWIITGKLET FDADAEYIDS PLVLEAQREK WITPCSLINR QTGNHYPFQE
210 220 230 240 250
DRGLGILTCR VEGDYIGSQN VSFSVFNKGK SMVNKSAWLI SAKQDLFLYQ
260 270 280 290 300
THSEILSVFP ETGSLGGGTD ITITGDFFDS SSQVTTAGIP CDISHVSPRK
310 320 330 340 350
IECTTRAPGK GARLTAPQAG NRGLLFEVGD AVAGLELTEA TPGYRRQIVP
360 370 380 390 400
NASSSFGFWS KEGQPFRARL SGFFVAPETN NYTFWIQADS QASLHFSWSE
410 420 430 440 450
EPRTKVKVAS IQVGTADWFD SWEQSGSEGT WQQKSPKLEL LGGARYYLEA
460 470 480 490 500
EHHGTAPSSG MRIGVQIHNT WLNPDVVTTY LREKHQISVR AQRLPEIQTL
510 520 530 540 550
TVSGKGDFSL TWDTISSQPL PANATAHQIQ TAIEKLLAVK CKLEPPSANI
560 570 580 590 600
LLRLGFEQGL EGSSSRGDLT SGTEPFCGRF SLRQPRHLDL IPPGAQKGYW
610 620 630 640 650
LDHYPQLCMA YKGHRSTILR MTVSFIIGFQ NITKTSTCDL SLMGISPQSW
660 670 680 690 700
RFTCTDLWDM CVYHSGNLQM PLVKASVLVH QISLFSVALE TGLLYLDEII
710 720 730 740 750
IADTNLTVSQ DDSATARPGG NLVESVSVVG SHMAYNITSW VAGCGAELPL
760 770 780 790 800
LTARAVPSEG EDSGSVQVMT QRLQKTSPPL GGHFRIQLSN TVISDVSVHM
810 820 830 840 850
SAVHLHKLLQ DNADDFTSRY LSAGDFTVKE DLNSCYEHVW TLSWATQVGD
860 870 880 890 900
LPNFIKVSDQ NLTGVNPAVA IRVVYDGGVF LGPIFGDMLA AAHQHTQVVV
910 920 930 940 950
RVNDIPAQCL GSCSFRYLTG ATPKVHSMRY SLDGDTSLLV YITGTGFSDD
960 970 980 990 1000
SKSFHVVVNK TSCKVIFSNQ TILVCQTDLL PVGVHQVSVL MRPSGLAVNA
1010 1020 1030 1040 1050
SGKGLLLYLE PRLDAVEPSR AAEIGGLWAT IRGSNLEDVS LVLFGSQSCA
1060 1070 1080 1090 1100
INVTTRHSRR LQCKVPPRGQ DGHIVDVTVF SGNHSTVLPR AFTYVSSLNP
1110 1120 1130 1140 1150
VIVSLSRNRS NIAGGETLFI GMALLENYAD LDVEICVQDT LAQAHTWTAQ
1160 1170 1180 1190 1200
GLRVVLPPRL PGLHTLSVSI NGISIHSKGV DLHIWYITEV FSIEPCCGSL
1210 1220 1230 1240 1250
LGGTILNISG VGFSRDPALV WVLVGNQSCD IVDSTETSIC CETPSAPLLS
1260 1270 1280 1290 1300
SADSLPVSVE VWTGNVSFIH GPAPSLVGKG FTFMYESATT PVVTAMWEEI
1310 1320 1330 1340 1350
TNSSLKFYLE GNHLSNSVIL LGNLKCDLET QYFGGNVSLS GCAFPFHSLE
1360 1370 1380 1390 1400
AGVYPIQVRH KDMGFANMSV VSQHFAVMPW ISTTIPMHSL ACGGTVFTIM
1410 1420 1430 1440 1450
GTPFKSRKRS IQVDILGPFT HVILSLRDDT LVCQVDLVGD HLTGAFFTFN
1460 1470 1480 1490 1500
ITVLVKEVDS KCQENCTVFM QEETSPVMDI LAADINGSLI TILMMDQKLG
1510 1520 1530 1540 1550
STADEPIEFM DNQLPCDLTS FNASHVTCHI NGLTPGLHYL AVVHISNGCV
1560 1570 1580 1590 1600
LGGNVSKYFS IIPQVFHYYP KNFSIHGGSL LAIEGTALRG QNTTSVYVGQ
1610 1620 1630 1640 1650
QACLIVHISS ELIQCIAPAG NGSVALEIEV DGILYHIGVI DYSDAFTPEL
1660 1670 1680 1690 1700
ISVSQIDDIL TFAVAQISEA VNMDIFIGMS PCVGVSGNST VVQCMVPLLP
1710 1720 1730 1740 1750
AGQYHVRGYD HSRGWASSAL VFTVRAAVIA VTENFGCLGG SLVHVFGAGF
1760 1770 1780 1790 1800
SPGAISAAVC GAPCHVLANA TVSAFSCLVR PLDVSLAFLC GLKKEEDGCE
1810 1820 1830 1840 1850
APVHTYVRCD LTVTVGTQTL AGSWHYLYTC EEGSQCVPVP DWWTEPGFPS
1860 1870 1880 1890 1900
FSGLFISPKV ERDEVLIYNS SCTITMETEA EMECETPNQP ITTKITEIRK
1910 1920 1930 1940 1950
SWGQNTQGKF SLQFCLRWSK THSWFPGRRP QDGDNVTVEQ GQQLLLDTNT
1960 1970 1980 1990 2000
SILNLLHVKG GKLIFMGPGP VELRAHAILV SNGGELQIGS EDKPFQGKAQ
2010 2020 2030 2040 2050
ITLYGSSHST SFFPYGFKFL AVRNGTLSLH GSVPEITVTH LRAVGRAGDT
2060 2070 2080 2090 2100
VLALEDAVDW HSGDEVLIVS STGVGGASLR EEIVIVETVH HADLHLRAPL
2110 2120 2130 2140 2150
RYSHDYSENW LAGKHHILKA TVALLSRSIT IKGNLTQERR KFLASCEKTN
2160 2170 2180 2190 2200
VVEGNLLHCL YSKSEKVLGS RDLGARVIIQ SFTKEPSRVQ LKGVQFQDMG
2210 2220 2230 2240 2250
QAFQKHLSSI MVVGAMRGSY IQGCTVWRSF SRGLDLGSTW GLEVDSNVFY
2260 2270 2280 2290 2300
KILGHALLIG YIPWEFSPGR KHGWSEQGNI IRNNVIISVS GAEGLSSPEM
2310 2320 2330 2340 2350
LTPSGIYIRS PINVVEGNRV CAAGYGYFFH LVNNQTSEAP LLSFTQNTAH
2360 2370 2380 2390 2400
FCTRFGLFVY PKFHPPWDHD TGLTMFQNFM VWGSAGGAQI FKSSNLHLKN
2410 2420 2430 2440 2450
FQVYSCRDFG IDILESDANT SVTDSLLLGH FTHKVKRLCM SAGIKTPKRS
2460 2470 2480 2490 2500
ELMISNTTFV NFDVINCVAI RTCSGCSRGQ GGFTVKTNHL KFINSPNLVA
2510 2520 2530 2540 2550
FPFPHAAILK DLDGSLSGKD KSHILASMET LPDSCSVNAN FSQIVQGSVC
2560 2570 2580 2590 2600
GEGVLFHRMS IGFAPDVFCD LIITDSRNKT TTVNYVHDTL SNCYGWMAVL
2610 2620 2630 2640 2650
LDQETYSLRF ADPCINKSLQ YSATFDNFSP GSYLLVVHTN LPPSPRILMR
2660 2670 2680 2690 2700
CGSRVGRSLL SLPLPAQDQG CDWFFNSQSR QLTYLVSGED QVQVSLQVEE
2710 2720 2730 2740 2750
GEVLPTISAS KAAPKSALKW SLSATWQDVE EGWGGHNHTI PGPGADVLIL
2760 2770 2780 2790 2800
PNKTVLVDTE LPFLKGLYVM GTLEFPVDKS NVLSVACLVI AGGEMKKKDQ
2810 2820 2830 2840 2850
KFLIALRASE GVFCDRLNGI RIDPGTIGVY GKFQLHGAYP KKSWTCLAAD
2860 2870 2880 2890 2900
IAPGNDRIIV EDVVDWKPDD KIVLSSSSYE PHEAEVLSIR EVKGHHIRVH
2910 2920 2930 2940 2950
GRLQHRHIGS SHVTEDGKHI SLAAEVGLLA RNIQIQSDTS CSGTLLVGSL
2960 2970 2980 2990 3000
RKSPREEFSG VLQFLNVEIW NFGSPLYSSI EFTNVSSESW ILSSTLHQNC
3010 3020 3030 3040 3050
GGGIRASASH GIILNDNIVF GTAGHGIDLE GEAYSLTNNL IVLMTQSAWS
3060 3070 3080 3090 3100
TTWVAGIKVD QAKDTLLRGN VVAGSERLGF HIQGHKCSSE MFWSDNVAHS
3110 3120 3130 3140 3150
NLHGLHLYEK VGSDNCTGVS GFLAFKNFDY GAMVQVENSV KIENVTLVDN
3160 3170 3180 3190 3200
SVGLLTVVQV SSPQDTIRNV QIVLRNSVIV ATSSSFDCIL DRTKPRSASL
3210 3220 3230 3240 3250
TSTDRAPPNP KGGRVGILWP VFTSVQNQWP WEPWHKVKNG HSVSGIMKLQ
3260 3270 3280 3290 3300
DVTFSSFVKS CYSDDLDICI LPNSDSTGMA APIIAERTRM FKIRDKHKFY
3310 3320 3330 3340 3350
FPPLHSRKNL EGVICSESDC ENPRKYLFKD LDGTALGLPP PVSVFPKTEA
3360 3370 3380 3390 3400
EWTESFFNTG PFREEQKCTY RSSVQGFICK QTDQVVLTLN SVNVTWPIQK
3410 3420 3430 3440 3450
LHPVVSVTRG FVDTFSSIND NTLCSTSGSV STFYSILPTR QITRVCFVDQ
3460 3470 3480 3490 3500
TPQVLRFSLL GNKSTSKLLL AIFYHEIQSP RVFLGGSFIP PTFVQSASSL
3510 3520 3530 3540 3550
LDESIGVNHF SIADNLLYVV LQGEETIEIR TDLSLHLAFS VTFSVLEKGW
3560 3570 3580 3590 3600
EVMILEKLTN FLQIDQSQIR VTHEMPGNER TLKAFADSKA KRKRNCPTVT
3610 3620 3630 3640 3650
CASHYRRVGQ RRPLMMEMSS SRVFPQTTVE TISKLIVIEI GDLPASKKTR
3660 3670 3680 3690 3700
QISCLSSYKL QNLAHQVITA QQTGVLENVL NISIGALLVT QSKGVMGYIN
3710 3720 3730 3740 3750
ASSFKDRSLI YARPYALFVL VQPSDGEVGK ELPVQPRLIF LDKQVTSHSN
3760 3770 3780 3790 3800
CRLPFVLCLF TGSTQAKTQD GYVSFSNLAV LISGSNWSFI FTVTSPPGAN
3810 3820 3830 3840 3850
FTARSKSFAV FPETRKERST IILATSMGSV VSWLALSCLV CCWFKRSKHR
3860 3870 3880 3890 3900
KTKPEEISES QTNDQKNQIH DSSKWQASQI EPEKEDSRKA EDMRMQVLLG
3910 3920 3930 3940 3950
RLNRLPHQTL DGVSRRKLGH LRAAREEEAA VPAPSTGHTC DPGSSTQQVH
3960 3970 3980 3990 4000
PPENETQEQL IRYQQANPDQ RLLLGPHLSQ DRQQGQGQSH RSADKVGVDL
4010 4020
SQEKSTSGHA TGTLCLPAAQ PETI
Length:4,024
Mass (Da):440,360
Last modified:November 22, 2017 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEC9322BFAFAAF003
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AAKN02018863 Genomic DNA No translation available.
AAKN02018864 Genomic DNA No translation available.
AAKN02018865 Genomic DNA No translation available.
AAKN02018866 Genomic DNA No translation available.
AAKN02018867 Genomic DNA No translation available.
AAKN02018868 Genomic DNA No translation available.
AAKN02018869 Genomic DNA No translation available.
AAKN02018870 Genomic DNA No translation available.
AAKN02018871 Genomic DNA No translation available.
AAKN02018872 Genomic DNA No translation available.

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSCPOT00000010567; ENSCPOP00000009404; ENSCPOG00000010473

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAKN02018863 Genomic DNA No translation available.
AAKN02018864 Genomic DNA No translation available.
AAKN02018865 Genomic DNA No translation available.
AAKN02018866 Genomic DNA No translation available.
AAKN02018867 Genomic DNA No translation available.
AAKN02018868 Genomic DNA No translation available.
AAKN02018869 Genomic DNA No translation available.
AAKN02018870 Genomic DNA No translation available.
AAKN02018871 Genomic DNA No translation available.
AAKN02018872 Genomic DNA No translation available.

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi10141.ENSCPOP00000009404

Genome annotation databases

EnsembliENSCPOT00000010567; ENSCPOP00000009404; ENSCPOG00000010473

Phylogenomic databases

eggNOGiENOG502QR85, Eukaryota
GeneTreeiENSGT00940000160697
HOGENOMiCLU_000057_1_0_1
InParanoidiH0VGZ2
TreeFamiTF329582

Gene expression databases

BgeeiENSCPOG00000010473, Expressed in adult mammalian kidney and 2 other tissues

Family and domain databases

Gene3Di2.160.20.10, 1 hit
2.60.40.10, 5 hits
InterProiView protein in InterPro
IPR039448, Beta_helix
IPR019316, G8_domain
IPR013783, Ig-like_fold
IPR014756, Ig_E-set
IPR002909, IPT_dom
IPR037524, PA14/GLEYA
IPR006626, PbH1
IPR012334, Pectin_lyas_fold
IPR011050, Pectin_lyase_fold/virulence
IPR028839, PKHD1
PANTHERiPTHR46769:SF1, PTHR46769:SF1, 1 hit
PfamiView protein in Pfam
PF13229, Beta_helix, 2 hits
PF10162, G8, 2 hits
PF01833, TIG, 6 hits
SMARTiView protein in SMART
SM01225, G8, 2 hits
SM00429, IPT, 5 hits
SM00710, PbH1, 10 hits
SUPFAMiSSF51126, SSF51126, 2 hits
SSF81296, SSF81296, 5 hits
PROSITEiView protein in PROSITE
PS51484, G8, 2 hits
PS51820, PA14, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiH0VGZ2_CAVPO
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: H0VGZ2
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: November 22, 2017
Last modified: August 12, 2020
This is version 61 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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