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Protein

Ribonuclease H

Gene

rnhA

Organism
Dechlorosoma suillum (strain ATCC BAA-33 / DSM 13638 / PS) (Azospira oryzae)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.UniRule annotationSAAS annotation

Catalytic activityi

Endonucleolytic cleavage to 5'-phosphomonoester.UniRule annotationSAAS annotation

Cofactori

Mg2+UniRule annotationNote: Binds 1 Mg2+ ion per subunit. May bind a second metal ion at a regulatory site, or after substrate binding.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi12Magnesium 1UniRule annotation1
Metal bindingi12Magnesium 2UniRule annotation1
Metal bindingi50Magnesium 1UniRule annotation1
Metal bindingi72Magnesium 1UniRule annotation1
Metal bindingi136Magnesium 2UniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionEndonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease
LigandMagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciDSUI640081:G1H1P-2464-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease HUniRule annotationSAAS annotation (EC:3.1.26.4UniRule annotationSAAS annotation)
Short name:
RNase HUniRule annotation
Gene namesi
Name:rnhAUniRule annotation
Ordered Locus Names:Dsui_2482Imported
OrganismiDechlorosoma suillum (strain ATCC BAA-33 / DSM 13638 / PS) (Azospira oryzae)Imported
Taxonomic identifieri640081 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaRhodocyclalesRhodocyclaceaeAzospira
Proteomesi
  • UP000005633 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Monomer.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi640081.Dsui_2482

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 144RNase HInterPro annotationAdd BLAST142

Sequence similaritiesi

Belongs to the RNase H family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4108UMW Bacteria
COG0328 LUCA
KOiK03469
OMAiMQEIEIF
OrthoDBiPOG091H04XT

Family and domain databases

CDDicd09278 RNase_HI_prokaryote_like, 1 hit
Gene3Di3.30.420.10, 1 hit
HAMAPiMF_00042 RNase_H, 1 hit
InterProiView protein in InterPro
IPR012337 RNaseH-like_sf
IPR002156 RNaseH_domain
IPR036397 RNaseH_sf
IPR022892 RNaseHI
PfamiView protein in Pfam
PF00075 RNase_H, 1 hit
SUPFAMiSSF53098 SSF53098, 1 hit
PROSITEiView protein in PROSITE
PS50879 RNASE_H, 1 hit

Sequencei

Sequence statusi: Complete.

G8QMK3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MANEATVEIY ADGACKGNPG PGGWGVFMRA GAHEKELWGG ERDTTNNRME
60 70 80 90 100
LTAVIRALEA LKRPVPVKLY TDSKYVQQGI SAWIHNWKRN GWRTADKKPV
110 120 130 140 150
KNADLWQELD VLARQFQVEW TWVKGHAGNP GNERADELAN RGIEDLRQSA
Length:150
Mass (Da):16,884
Last modified:February 22, 2012 - v1
Checksum:iE58662D4A60D7D7D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003153 Genomic DNA Translation: AEV26835.1
RefSeqiWP_014237529.1, NC_016616.1

Genome annotation databases

EnsemblBacteriaiAEV26835; AEV26835; Dsui_2482
KEGGidsu:Dsui_2482

Similar proteinsi

Entry informationi

Entry nameiG8QMK3_DECSP
AccessioniPrimary (citable) accession number: G8QMK3
Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: March 28, 2018
This is version 41 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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